PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906032.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 340aa    MW: 36779.3 Da    PI: 8.9611
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906032.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA97.51.4e-30173229158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQ+++Il+RRq+Rak+e+e+k  +k rkpylheSRh hA+rR+RgsgGrF
  XP_010906032.1 173 DGPIYVNAKQFHGILRRRQARAKAERENKR-TKVRKPYLHESRHLHAMRRARGSGGRF 229
                     57***************************9.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-33171232IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.347172232IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.6E-24175197IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.2E-28175229IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860177197IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.6E-24206229IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
MMQAAIAFKN NGGLGQISVP QAPQATLVPW WLGSQPLYEE PFGQSKSFTE NHPNGEDQLP  60
AAPRQMHHAV DPRPGPGPGP GPGPDKGGNS TTKSSVIPDS NDSGKEQKTE QHSAVISLQS  120
SMPEYQGCFE LGLGQTMVCS NYSYVDHCYG LYAPYGAQAM HGRMLLPLNM STDGPIYVNA  180
KQFHGILRRR QARAKAEREN KRTKVRKPYL HESRHLHAMR RARGSGGRFL NTTKAGTGQG  240
GNLNTKVRVE APPPRPAACP RSEVLQSDSG NIISASGSSS LSGSEVSSMY AREDDHFQVI  300
ERLHPSGSHP MSNMMDGVHG ASIHMKWVTA ADGCCDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A8e-18173231260NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906032.10.0nuclear transcription factor Y subunit A-10 isoform X2
TrEMBLA0A2H3ZBG00.0A0A2H3ZBG0_PHODC; nuclear transcription factor Y subunit A-10-like isoform X1
STRINGXP_008811292.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06510.32e-31nuclear factor Y, subunit A10