PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906053.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NAC
Protein Properties Length: 403aa    MW: 45086.3 Da    PI: 6.2408
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906053.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM164.15.2e-51541821128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                     +ppGfrFhPt+eel+++yLkkkv+ +k++l +vi+++d++k+ePwd++   ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkatg+dk +
  XP_010906053.1  54 VPPGFRFHPTEEELLNYYLKKKVACQKIDL-DVIRDIDLNKLEPWDIQDkcRIGStPQNEWYFFSHKDKKYPTGTRTNRATAAGFWKATGRDKVI 147
                     69****************************.9***************952433332556************************************ PP

             NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ + + +g++ktLvfy+grap+g k+dW+mheyrl
  XP_010906053.1 148 YT-RFKRIGMRKTLVFYSGRAPHGLKSDWIMHEYRL 182
                     **.8889***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-5749217IPR003441NAC domain
PROSITE profilePS5100555.5754217IPR003441NAC domain
PfamPF023653.1E-2755182IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 403 aa     Download sequence    Send to blast
MSSNNNINIA TWPAPFFPSR CSSSSSNSGY SCLSTCNHMR STDMGISVNG QSCVPPGFRF  60
HPTEEELLNY YLKKKVACQK IDLDVIRDID LNKLEPWDIQ DKCRIGSTPQ NEWYFFSHKD  120
KKYPTGTRTN RATAAGFWKA TGRDKVIYTR FKRIGMRKTL VFYSGRAPHG LKSDWIMHEY  180
RLDDHLDTNT SSSNASSLAG DATTQEEAWV VCRVFKKKSC QTAFANPHSN SSIISNSRTQ  240
LLHSCDGEPL DQILQYLGRS CKQESDAILS IDNNMKNKDY VRPIETALSN MKLPTLESPS  300
LQSLPSFAPE VDPDENKEAI MDMEVVCNSM MAFSDWPSMN EEISGSQIGS GSSEAPKQTP  360
YINEPSFGSP PSNGLFSNSH DCRYGDGDPW SFMQSVSSGS DYM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A9e-505121914167NO APICAL MERISTEM PROTEIN
1ut4_B9e-505121914167NO APICAL MERISTEM PROTEIN
1ut7_A9e-505121914167NO APICAL MERISTEM PROTEIN
1ut7_B9e-505121914167NO APICAL MERISTEM PROTEIN
4dul_A9e-505121914167NAC domain-containing protein 19
4dul_B9e-505121914167NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator of genes involved in biosynthesis of secondary walls. Together with NST2 and NST3, required for the secondary cell wall thickening of sclerenchymatous fibers, secondary xylem (tracheary elements), and of the anther endocethium, which is necessary for anther dehiscence. May also regulate the secondary cell wall lignification of other tissues. {ECO:0000269|PubMed:16214898, ECO:0000269|PubMed:17237351, ECO:0000269|PubMed:17333250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906053.10.0NAC domain-containing protein 43
SwissprotQ84WP61e-106NAC43_ARATH; NAC domain-containing protein 43
TrEMBLA0A2H3WXR50.0A0A2H3WXR5_PHODC; NAC domain-containing protein 43
STRINGXP_008775289.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.15e-93NAC family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Gondolf VM, et al.
    A gene stacking approach leads to engineered plants with highly increased galactan levels in Arabidopsis.
    BMC Plant Biol., 2014. 14: p. 344
    [PMID:25492673]
  3. Jaradat MR,Ruegger M,Bowling A,Butler H,Cutler AJ
    A comprehensive transcriptome analysis of silique development and dehiscence in Arabidopsis and Brassica integrating genotypic, interspecies and developmental comparisons.
    GM Crops Food, 2014. 5(4): p. 302-20
    [PMID:25523176]
  4. Yuan Y,Teng Q,Zhong R,Ye ZH
    TBL3 and TBL31, Two Arabidopsis DUF231 Domain Proteins, are Required for 3-O-Monoacetylation of Xylan.
    Plant Cell Physiol., 2016. 57(1): p. 35-45
    [PMID:26556650]
  5. Yang C, et al.
    Transcription Factor MYB26 Is Key to Spatial Specificity in Anther Secondary Thickening Formation.
    Plant Physiol., 2017. 175(1): p. 333-350
    [PMID:28724622]
  6. Pascual MB, et al.
    PpNAC1, a main regulator of phenylalanine biosynthesis and utilization in maritime pine.
    Plant Biotechnol. J., 2018. 16(5): p. 1094-1104
    [PMID:29055073]
  7. Liu C,Yu H,Li L
    SUMO modification of LBD30 by SIZ1 regulates secondary cell wall formation in Arabidopsis thaliana.
    PLoS Genet., 2019. 15(1): p. e1007928
    [PMID:30657769]