PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906283.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 247aa    MW: 25270.3 Da    PI: 8.0955
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906283.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003495117123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ykC+ Cgk F +   L  H  +H
  XP_010906283.1  95 YKCSVCGKAFASFQALGGHKASH 117
                     9**********999998888777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139121.9E-1294119IPR007087Zinc finger, C2H2
SMARTSM003550.01495117IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.69995117IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.3E-595117IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.14E-895117No hitNo description
PROSITE patternPS00028097117IPR007087Zinc finger, C2H2
SuperFamilySSF576671.14E-8144171No hitNo description
PfamPF139121.0E-13148173IPR007087Zinc finger, C2H2
SMARTSM003550.26149171IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.995149171IPR007087Zinc finger, C2H2
PROSITE patternPS000280151171IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MAVDALETTA ASTPPPTATE TSDEQFPHHV EGWAKRKRSK RHHGFFDHPP TEEEYLALCL  60
VMLARGGSGH RLPSLNPGSA TATVAAAPVK EKLAYKCSVC GKAFASFQAL GGHKASHRKL  120
AGGEDSTASP AASASGSSTA AASVSGRVHQ CSVCLKTFPS GQALGGHKRC HYDGSLGGGA  180
ASASASASAV AAASMSEGAG SSDKGFDLNL PAVPEFAFDA ARRCVAAEEE EVQSPLAFKK  240
PRLLIPA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906283.11e-177zinc finger protein 1
TrEMBLA0A2H3Y3331e-136A0A2H3Y333_PHODC; zinc finger protein ZAT10
STRINGXP_008792675.11e-137(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.16e-41C2H2 family protein