PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906354.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

YABBY

Protein Properties

Length: 175aa MW: 19485.3 Da PI: 10.2626

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906354.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	171.2	6.7e-53	20	149	24	170
YABBY 24 vsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvsseklsenedeevprvppvirP 118 vsvP + l+++vtvrCGhCt+llsvn+ q+ + ++ + + ++++++ ++++ +++ ++++++++++ +p + P XP_010906354.1 20 VSVPGNNLLNIVTVRCGHCTNLLSVNMGGLLQTAPLQDL-QVVG-----------SQDYRKECGSSSKCNRTSVMYSMQNDQQQTLP-----VPP 97 9**************************9999998883.3322...........22333333333333333445567888888888.....569 PP YABBY 119 PekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 PekrqrvPsaynrfi+eeiqrika+nPdishreafs+aaknWahfP+ihfgl XP_010906354.1 98 PEKRQRVPSAYNRFIREEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 149 ************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04690	5.5E-58	20	149	IPR006780	YABBY protein
SuperFamily	SSF47095	1.7E-8	85	142	IPR009071	High mobility group box domain
Gene3D	G3DSA:1.10.30.10	4.4E-5	98	143	IPR009071	High mobility group box domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0007275	Biological Process	multicellular organism development

Sequence ? help Back to Top
Protein Sequence Length: 175 aa Download sequence Send to blast
MIRLVLRKPS TIILGLHGKV SVPGNNLLNI VTVRCGHCTN LLSVNMGGLL QTAPLQDLQV 60 VGSQDYRKEC GSSSKCNRTS VMYSMQNDQQ QTLPVPPPEK RQRVPSAYNR FIREEIQRIK 120 ANNPDISHRE AFSTAAKNWA HFPHIHFGLN MDGNKQVKFD EAIAGPGGQK AQSFH

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010906354.2	1e-128	LOW QUALITY PROTEIN: protein YABBY 2
Swissprot	Q10FZ7	8e-62	YAB2_ORYSJ; Protein YABBY 2
TrEMBL	A0A2H3Z9S2	1e-103	A0A2H3Z9S2_PHODC; protein YABBY 2-like isoform X1
STRING	XP_008810626.1	1e-104	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1394	37	121

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08465.1	5e-57	YABBY family protein