PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906385.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family DBB
Protein Properties Length: 338aa    MW: 36111.4 Da    PI: 5.202
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906385.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box216.7e-07443538
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                     C+ ++++e+  fC  ++  lCe C    H+       H+
  XP_010906385.1  4 QCDVCGKEEAAVFCCADEAALCEPCDRRVHRAnklagkHR 43
                    7*****************************7677777776 PP
2zf-B_box21.83.8e-076195437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg..H 37
                    ++C+ ++e +   fC++++  lC+dC + +H g  H
  XP_010906385.1 61 PVCDICQERRGFVFCQEDRAILCRDCDVPIH-GanH 95
                    79*******9*********************.4465 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.04147IPR000315B-box-type zinc finger
SMARTSM003365.3E-12147IPR000315B-box-type zinc finger
CDDcd000213.37E-7345No hitNo description
PfamPF006432.7E-5444IPR000315B-box-type zinc finger
PROSITE profilePS501199.34358105IPR000315B-box-type zinc finger
SMARTSM003366.2E-1358105IPR000315B-box-type zinc finger
PfamPF006432.7E-56095IPR000315B-box-type zinc finger
CDDcd000213.35E-861105No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MKVQCDVCGK EEAAVFCCAD EAALCEPCDR RVHRANKLAG KHRRFSLLPP SSSSSSSPSH  60
PVCDICQERR GFVFCQEDRA ILCRDCDVPI HGANHLTMKH NRFLLTGLRL SSAPISSSSS  120
SSSPEAEIVV AGNNNSDHSN KSVLEKSREE ALLADDSVLC SSDSSINTST FAAAAANQAG  180
SNSGAGGGSS ISDYLIKMCP GWRVEDLLVD DAAASSFAAD GFSKQMTMDE MLPFMEADLE  240
GAGLEAVAEE FPIWVPHVPQ IPPPELPAVP PGGGAATAGV HYQPWVAAKD LNSTHLLHGA  300
KAADRERWSD DAFTVPQIAP ASSNPGKRPR QQQSLWYY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906385.10.0B-box zinc finger protein 20 isoform X3
TrEMBLA0A2H3WXC31e-149A0A2H3WXC3_PHODC; B-box zinc finger protein 20-like isoform X1
STRINGXP_008775100.11e-150(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39070.11e-43DBB family protein