PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906525.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 720aa MW: 82684.2 Da PI: 8.0979

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906525.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	56.3	1e-17	74	167	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHela 90 ++Y ++A++ GF vr+++sk + ++ ++kr++vC + g + + k+ + k++r+++ +r++C+a++++kk+ +w+v ++++ HnHel XP_010906525.1 74 EYYTNFARNNGFLVRRERSKGNpEHPLGVYKRELVCHRAGPPLPIKSGEAKRQRKKKPSRCKCDAQMVIKKNIsagITRWVVVNFSNVHNHELL 167 69***************999766677*************999999999*************98666789***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-14	74	167	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	4.4E-22	289	382	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.47	554	602	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.5E-5	573	601	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	9.5E-4	577	604	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 720 aa Download sequence Send to blast
MMKAHWSHKQ QCPCGDDQCY LDAESYEEDE LVEPMHLTEP NLSLGTPQTS LGVNKIVASP 60 YVGQSFQSDD EALEYYTNFA RNNGFLVRRE RSKGNPEHPL GVYKRELVCH RAGPPLPIKS 120 GEAKRQRKKK PSRCKCDAQM VIKKNISAGI TRWVVVNFSN VHNHELLDSN DAQYFPGYRY 180 ISAVDRERIL ALAKGGCNVN LIMRALEMEK GVRPGELTFT EKDLKNFLQA SMSINPESEG 240 SELLKACKAM KEKNPDFRYE FTLYESNKLE HLAWSYAGSV RAYKLFGDVV FFDTTYRLHS 300 YDRPAGVWFG VDNHGHTIFF CCVVLLDEKP DSYKWALQAF LRLMDKKFPQ TILTDFHMGL 360 KDAISVELPS TKHAFSIWHL MSKLPSWFSA SLGPQYEKFK SEFYRIHDLD TEEEFEHQWN 420 QMVVEFGLGS DKHAALLFSH RSYWAVPYLR NWFFGGLLTT GHSMSIRSFF RGFLNSQTRL 480 KDIVEQVGVA VDFQNQAGEE ATTQQSRQNI KIRTCLPIEE HASTILTHYA FEMFQKEIML 540 STQFAVFETS RENYLVRHHL KSDGGHIVSC IASNEDICCT CRGFECTGIL CKHTLRVLSL 600 KNCFLIPEKY LLHRWRRESS LFPKSSGYKY RSQALRSLAS IIIQESSITK DRFDYVQWHL 660 SRLLNHVRDM PATDEAASDL EPSSSFDATV DVVPARSVTR GRPRKIRGIV KVIKETQASS

Sequence ? help Back to Top

Protein Sequence Length: 720 aa Download sequence Send to blast

MMKAHWSHKQ QCPCGDDQCY LDAESYEEDE LVEPMHLTEP NLSLGTPQTS LGVNKIVASP  60
YVGQSFQSDD EALEYYTNFA RNNGFLVRRE RSKGNPEHPL GVYKRELVCH RAGPPLPIKS  120
GEAKRQRKKK PSRCKCDAQM VIKKNISAGI TRWVVVNFSN VHNHELLDSN DAQYFPGYRY  180
ISAVDRERIL ALAKGGCNVN LIMRALEMEK GVRPGELTFT EKDLKNFLQA SMSINPESEG  240
SELLKACKAM KEKNPDFRYE FTLYESNKLE HLAWSYAGSV RAYKLFGDVV FFDTTYRLHS  300
YDRPAGVWFG VDNHGHTIFF CCVVLLDEKP DSYKWALQAF LRLMDKKFPQ TILTDFHMGL  360
KDAISVELPS TKHAFSIWHL MSKLPSWFSA SLGPQYEKFK SEFYRIHDLD TEEEFEHQWN  420
QMVVEFGLGS DKHAALLFSH RSYWAVPYLR NWFFGGLLTT GHSMSIRSFF RGFLNSQTRL  480
KDIVEQVGVA VDFQNQAGEE ATTQQSRQNI KIRTCLPIEE HASTILTHYA FEMFQKEIML  540
STQFAVFETS RENYLVRHHL KSDGGHIVSC IASNEDICCT CRGFECTGIL CKHTLRVLSL  600
KNCFLIPEKY LLHRWRRESS LFPKSSGYKY RSQALRSLAS IIIQESSITK DRFDYVQWHL  660
SRLLNHVRDM PATDEAASDL EPSSSFDATV DVVPARSVTR GRPRKIRGIV KVIKETQASS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010906525.1	0.0	protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2H3Z2X8	0.0	A0A2H3Z2X8_PHODC; protein FAR1-RELATED SEQUENCE 11-like
STRING	XP_008807587.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11