PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906558.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

AP2

Protein Properties

Length: 574aa MW: 62897.6 Da PI: 5.3033

Description

AP2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906558.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	32.9	1.6e-10	171	202	1	37
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfg 37 s+y+GV++++++grW+++I+d + k+++lg+ + XP_010906558.1 171 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGTCD 202 78*****************......55****976 PP
2	AP2	43.8	6.2e-14	308	358	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+++GV+ +k grW+A+ + +k+++lg f+t+eeAa+a+++a+ k +g XP_010906558.1 308 SRFRGVTLHK-CGRWEARMGQF--L-GKKYVYLGLFDTEEEAARAYDKAAIKCNG 358 789*****.7**5553..2.26********************99776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51032	14.658	172	273	IPR001471	AP2/ERF domain
SMART	SM00380	2.7E-18	172	279	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.44E-6	242	274	IPR016177	DNA-binding domain
Gene3D	G3DSA:3.30.730.10	1.6E-8	243	273	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.83E-17	308	368	IPR016177	DNA-binding domain
CDD	cd00018	2.27E-25	308	368	No hit	No description
Pfam	PF00847	9.9E-10	308	358	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	16.12	309	366	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.9E-16	309	366	IPR001471	AP2/ERF domain
SMART	SM00380	1.8E-32	309	372	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 574 aa Download sequence Send to blast
MAGDSGKKAG LGGEEARMWD LNNAALVEEE EGCCSPAAVD GGEEKEAAPG TASTSAEADN 60 EKDDSSSSAI VVEASDEREA DVGGAGKLFG FSISGHRDRS TSAVVTHQFF PLGSPEGTGG 120 GAGEVLEAAP PRAHWVGVRF FQSSEPGVVG KAVEAPQPVK KSRRGPRSRS SQYRGVTFYR 180 RTGRWESHIW DCGKQVYLGT CDVKNLYELM EIFVFILDDC GGVYICLSTF CXLLMFSMEL 240 TXIGGFDTAH AAARAYDRAA IKFRGVDADI NFSLDDYEED LKQMSNLTKE EFVQVLRRQS 300 TGFPRGSSRF RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEEEAARAYD KAAIKCNGKD 360 AVTNFDPSIY ENELDPPTSN TEHNLDLCLG SSGTKRNNLE PMDDESSNAM DQRLPIAFDP 420 EWNRSTRLKF DDKLKLPEEK ESRIHHPHSN ACFQSPVPFN GNEMFKYPLL QRNGDAFPMF 480 QIIPQQFNSS GFHQHPGCID GARTVGGGSL SLAIGCEQQQ KHSFWGNGGN NWPSASTLPS 540 QMFAMTTSAA SSGFPPQIAK LPPSWQQKNG FSLS

Sequence ? help Back to Top

Protein Sequence Length: 574 aa Download sequence Send to blast

MAGDSGKKAG LGGEEARMWD LNNAALVEEE EGCCSPAAVD GGEEKEAAPG TASTSAEADN  60
EKDDSSSSAI VVEASDEREA DVGGAGKLFG FSISGHRDRS TSAVVTHQFF PLGSPEGTGG  120
GAGEVLEAAP PRAHWVGVRF FQSSEPGVVG KAVEAPQPVK KSRRGPRSRS SQYRGVTFYR  180
RTGRWESHIW DCGKQVYLGT CDVKNLYELM EIFVFILDDC GGVYICLSTF CXLLMFSMEL  240
TXIGGFDTAH AAARAYDRAA IKFRGVDADI NFSLDDYEED LKQMSNLTKE EFVQVLRRQS  300
TGFPRGSSRF RGVTLHKCGR WEARMGQFLG KKYVYLGLFD TEEEAARAYD KAAIKCNGKD  360
AVTNFDPSIY ENELDPPTSN TEHNLDLCLG SSGTKRNNLE PMDDESSNAM DQRLPIAFDP  420
EWNRSTRLKF DDKLKLPEEK ESRIHHPHSN ACFQSPVPFN GNEMFKYPLL QRNGDAFPMF  480
QIIPQQFNSS GFHQHPGCID GARTVGGGSL SLAIGCEQQQ KHSFWGNGGN NWPSASTLPS  540
QMFAMTTSAA SSGFPPQIAK LPPSWQQKNG FSLS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional activator that promotes early floral meristem identity (PubMed:7919989). Is required subsequently for the transition of an inflorescence meristem into a floral meristem (PubMed:1675158). Plays a central role in the specification of floral identity, particularly for the normal development of sepals and petals in the wild-type flower, by spatially controlling the expression domains of multiple floral organ identity genes (PubMed:1675158, PubMed:23034631). Acts as A class cadastral protein by repressing the C class floral homeotic gene AGAMOUS in association with other repressors like LEUNIG and SEUSS (PubMed:1675158). Directly represses AGAMOUS by recruiting the transcriptional corepressor TOPLESS and the histone deacetylase HDA19 (PubMed:23034631). It is also required during seed development (PubMed:1675158). {ECO:0000269\|PubMed:1675158, ECO:0000269\|PubMed:23034631, ECO:0000269\|PubMed:7919989}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by the C class floral homeotic protein AGAMOUS in stamens and carpels. MicroRNA 172 (miRNA172) negatively regulates APETALA2 at the translational level and may modulate its expression pattern. Seems not to be influenced by jasmonate and Alternaria brassicicola. {ECO:0000269\|PubMed:12805630, ECO:0000269\|PubMed:12893888, ECO:0000269\|PubMed:14555699}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019702222.1	0.0	APETALA2-like protein 5
Swissprot	P47927	1e-105	AP2_ARATH; Floral homeotic protein APETALA 2
TrEMBL	A0A2H3YAV0	0.0	A0A2H3YAV0_PHODC; AP2-like ethylene-responsive transcription factor TOE3 isoform X1
STRING	XP_008795894.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP5514	36	58

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36920.2	1e-103	AP2 family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Thamilarasan SK,Park JI,Jung HJ,Nou IS Genome-wide analysis of the distribution of AP2/ERF transcription factors reveals duplication and CBFs genes elucidate their potential function in Brassica oleracea. BMC Genomics, 2014. 15: p. 422 [PMID:24888752] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Ranocha P,Francoz E,Burlat V,Dunand C Expression of PRX36, PMEI6 and SBT1.7 is controlled by complex transcription factor regulatory networks for proper seed coat mucilage extrusion. Plant Signal Behav, 2014. 9(11): p. e977734 [PMID:25531128] Djemal R,Khoudi H Isolation and molecular characterization of a novel WIN1/SHN1 ethylene-responsive transcription factor TdSHN1 from durum wheat (Triticum turgidum. L. subsp. durum). Protoplasma, 2015. 252(6): p. 1461-73 [PMID:25687296] Kazan K Diverse roles of jasmonates and ethylene in abiotic stress tolerance. Trends Plant Sci., 2015. 20(4): p. 219-29 [PMID:25731753] Prunet N, et al. SQUINT promotes stem cell homeostasis and floral meristem termination in Arabidopsis through APETALA2 and CLAVATA signalling. J. Exp. Bot., 2015. 66(21): p. 6905-16 [PMID:26269626] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Zumajo-Cardona C,Pabón-Mora N Evolution of the APETALA2 Gene Lineage in Seed Plants. Mol. Biol. Evol., 2016. 33(7): p. 1818-32 [PMID:27030733] Zhao Y, et al. An alternative strategy for targeted gene replacement in plants using a dual-sgRNA/Cas9 design. Sci Rep, 2016. 6: p. 23890 [PMID:27033976] Gao R,Liu P,Irwanto N,Loh R,Wong SM Upregulation of LINC-AP2 is negatively correlated with AP2 gene expression with Turnip crinkle virus infection in Arabidopsis thaliana. Plant Cell Rep., 2016. 35(11): p. 2257-2267 [PMID:27473526] Huang Z, et al. APETALA2 antagonizes the transcriptional activity of AGAMOUS in regulating floral stem cells in Arabidopsis thaliana. New Phytol., 2017. 215(3): p. 1197-1209 [PMID:27604611] Dory M, et al. Kinase-Associated Phosphoisoform Assay: a novel candidate-based method to detect specific kinase-substrate phosphorylation interactions in vivo. BMC Plant Biol., 2016. 16(1): p. 204 [PMID:27655033] Wang P, et al. Expansion and Functional Divergence of AP2 Group Genes in Spermatophytes Determined by Molecular Evolution and Arabidopsis Mutant Analysis. Front Plant Sci, 2016. 7: p. 1383 [PMID:27703459] Sharma P, et al. Promoter Trapping and Deletion Analysis Show Arabidopsis thaliana APETALA2 Gene Promoter Is Bidirectional and Functions as a Pollen- and Ovule-Specific Promoter in the Reverse Orientation. Appl. Biochem. Biotechnol., 2017. 182(4): p. 1591-1604 [PMID:28130768] Kihira M, et al. Arabidopsis thaliana FLO2 is Involved in Efficiency of Photoassimilate Translocation, Which is Associated with Leaf Growth and Aging, Yield of Seeds and Seed Quality. Plant Cell Physiol., 2017. 58(3): p. 440-450 [PMID:28158741] Balanzà V, et al. Genetic control of meristem arrest and life span in Arabidopsis by a FRUITFULL-APETALA2 pathway. Nat Commun, 2018. 9(1): p. 565 [PMID:29422669] Dotto M,Gómez MS,Soto MS,Casati P UV-B radiation delays flowering time through changes in the PRC2 complex activity and miR156 levels in Arabidopsis thaliana. Plant Cell Environ., 2018. 41(6): p. 1394-1406 [PMID:29447428] Song C,Lee J,Kim T,Hong JC,Lim CO VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis. Planta, 2018. 247(6): p. 1439-1448 [PMID:29536220]