PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906563.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ERF
Protein Properties Length: 162aa    MW: 17564.7 Da    PI: 10.0715
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906563.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-171968255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+GVr +k +g+WvAeIr+p   +kr r++lg++ ++  Aaka++ a  +l+g
  XP_010906563.1 19 PYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSSPIAAAKAYDTAVFYLRG 68
                    59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103222.1941976IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-291977IPR001471AP2/ERF domain
SMARTSM003804.1E-341982IPR001471AP2/ERF domain
PRINTSPR003674.3E-122031IPR001471AP2/ERF domain
PfamPF008473.7E-112068IPR001471AP2/ERF domain
CDDcd000181.01E-242076No hitNo description
SuperFamilySSF541717.19E-212078IPR016177DNA-binding domain
PRINTSPR003674.3E-125878IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 162 aa     Download sequence    Send to blast
MEGESPSPPP ARKDGKERPY RGVRMRKWGK WVAEIREPNK RSRIWLGSYS SPIAAAKAYD  60
TAVFYLRGRS ARLNFPDDIS VDADADADAA MSAALIRKKA TEVGARIDAL HATAAAAAAA  120
ASPAAGAHSL GVERRRRPAY KRPDLNQKPS PESSDDDCEL FG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-141680267ATERF1
3gcc_A2e-141680267ATERF1
5wx9_A6e-1420811577Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906563.11e-112ethylene-responsive transcription factor ERF011
SwissprotO221742e-46ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLA0A2H3ZSE82e-78A0A2H3ZSE8_PHODC; ethylene-responsive transcription factor ERF011-like
STRINGXP_008795891.13e-79(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50260.14e-38cooperatively regulated by ethylene and jasmonate 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]