PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906718.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LSD

Protein Properties

Length: 173aa MW: 18190.1 Da PI: 8.6126

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906718.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	47.8	2.3e-15	7	31	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr lL YPrGA++VRCa+C+tV XP_010906718.1 7 CNGCRSLLLYPRGATNVRCAICNTV 31 ************************9 PP
2	zf-LSD1	44.4	2.7e-14	46	70	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+rGA VRCa+C+t+ XP_010906718.1 46 CGGCRTLLMYTRGANGVRCACCNTI 70 ***********************97 PP
3	zf-LSD1	47.8	2.3e-15	84	108	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+C+t+L+YP+GApsV+Ca+C+ V XP_010906718.1 84 CGQCHTTLMYPYGAPSVKCAICHYV 108 **********************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01053	1.6E-15	4	34	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.7E-13	7	31	IPR005735	Zinc finger, LSD1-type
SuperFamily	SSF48695	6.98E-6	20	107	IPR011031	Multihaem cytochrome
Gene3D	G3DSA:3.90.10.10	4.5E-4	20	107	No hit	No description
TIGRFAMs	TIGR01053	2.1E-16	43	72	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	4.0E-12	46	70	IPR005735	Zinc finger, LSD1-type
TIGRFAMs	TIGR01053	9.9E-11	81	110	IPR005735	Zinc finger, LSD1-type
Pfam	PF06943	3.0E-14	84	108	IPR005735	Zinc finger, LSD1-type

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MQSQLVCNGC RSLLLYPRGA TNVRCAICNT VTSVPPPGME MSQLVCGGCR TLLMYTRGAN 60 GVRCACCNTI NLAQSANQVS HVSCGQCHTT LMYPYGAPSV KCAICHYVTN IGASNMRVPI 120 PAAHRPNEST PMPPSTSALG SRAQTVVVEN PMTVDESGKL VSNVVVGVTT GKK

Functional Description ? help Back to Top
Source	Description
UniProt	Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019701999.1	1e-122	protein LSD1
Swissprot	Q6ASS2	4e-73	LOL3_ORYSJ; Protein LOL3
TrEMBL	A0A2H3YW45	1e-109	A0A2H3YW45_PHODC; protein LSD1-like
STRING	XP_008804686.1	1e-110	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP1347	38	124

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.7	1e-67	LSD family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]