PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010906925.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 234aa    MW: 26221.7 Da    PI: 9.5056
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010906925.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF70.91.1e-221967149
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                    kri+n+  rqv fskRr+g++KKA+ELS+LC+ae+ v++fs+ gk + +
  XP_010906925.1 19 KRIQNEEARQVCFSKRRTGLFKKASELSILCGAEIGVVVFSPAGKAFSF 67
                    79******************************************97766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.71E-291183IPR002100Transcription factor, MADS-box
SMARTSM004321.7E-351170IPR002100Transcription factor, MADS-box
PROSITE profilePS5006627.3191171IPR002100Transcription factor, MADS-box
CDDcd002651.94E-381283No hitNo description
PRINTSPR004041.1E-211333IPR002100Transcription factor, MADS-box
PfamPF003192.6E-262067IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-213348IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-214869IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MTSMVRRKPS MGRQKIEIKR IQNEEARQVC FSKRRTGLFK KASELSILCG AEIGVVVFSP  60
AGKAFSFGHP SVDAVFDRFL TGNPHHGNSG GPAADSRRGA VVRELNRQYM ELHGLVDAER  120
KRREALEEAM KGEQGGRPYW WDNNVDSLAL EDLEEYEKKL LELRNNVAKV ADQLLHEAMA  180
RKQQQHHHHH HQQQQQQFPM VGAAVALPGP FAIKNEDAIH PSLGGGLGFG HGFF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A8e-191196187MEF2C
5f28_B8e-191196187MEF2C
5f28_C8e-191196187MEF2C
5f28_D8e-191196187MEF2C
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1118123ERKRRE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010906925.21e-172agamous-like MADS-box protein AGL62
TrEMBLA0A2H3Y1C21e-130A0A2H3Y1C2_PHODC; agamous-like MADS-box protein AGL62
STRINGXP_008791999.11e-131(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-35AGAMOUS-like 62