PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906970.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YB

Protein Properties

Length: 146aa MW: 16100.4 Da PI: 10.0217

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906970.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.9	1.3e-14	58	127	24	93
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 + + kda e + fi ++++ a+d c++ kr+tin++d+l al ++ f +++ pl++yl+ +r XP_010906970.1 58 EVNVHKDALLAFAESARIFIHYLSATANDICKESKRQTINAEDVLKALEEIEFPEFIGPLRIYLEDFRRK 127 4568899999999******************************************************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.4E-31	29	140	IPR009072	Histone-fold
SuperFamily	SSF47113	2.92E-24	30	139	IPR009072	Histone-fold
Pfam	PF00808	2.9E-10	57	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 146 aa Download sequence Send to blast
MAKKGGGGSE GGAAPAPARA TVPAVAVEEL PRAIVQRVVK DKLAELSSGG RRRGGQEEVN 60 VHKDALLAFA ESARIFIHYL SATANDICKE SKRQTINAED VLKALEEIEF PEFIGPLRIY 120 LEDFRRKKCG KEVWDKDKRN RKKNGN

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010906970.1	1e-103	DNA polymerase epsilon subunit 3 isoform X1
TrEMBL	M0TNH8	4e-49	M0TNH8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P07750_001	7e-50	(Musa acuminata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP10414	37	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	4e-35	nuclear factor Y, subunit B11