PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010906971.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NF-YB

Protein Properties

Length: 125aa MW: 13381.3 Da PI: 6.5358

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010906971.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	41.5	3.1e-13	58	122	24	88
NF-YB 24 nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylk 88 + + kda e + fi ++++ a+d c++ kr+tin++d+l al ++ f +++ pl++yl+ XP_010906971.1 58 EVNVHKDALLAFAESARIFIHYLSATANDICKESKRQTINAEDVLKALEEIEFPEFIGPLRIYLE 122 4568899999999**************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	1.3E-28	29	122	IPR009072	Histone-fold
SuperFamily	SSF47113	2.55E-22	30	123	IPR009072	Histone-fold
Pfam	PF00808	2.0E-10	57	105	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 125 aa Download sequence Send to blast
MAKKGGGGSE GGAAPAPARA TVPAVAVEEL PRAIVQRVVK DKLAELSSGG RRRGGQEEVN 60 VHKDALLAFA ESARIFIHYL SATANDICKE SKRQTINAED VLKALEEIEF PEFIGPLRIY 120 LEGVL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010906971.1	3e-85	DNA polymerase epsilon subunit 3 isoform X2
TrEMBL	M0TNH8	3e-45	M0TNH8_MUSAM; Uncharacterized protein
STRING	GSMUA_Achr8P07750_001	4e-46	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-33	nuclear factor Y, subunit B11