PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907078.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family CO-like
Protein Properties Length: 468aa    MW: 50925.2 Da    PI: 7.0673
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907078.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.35.5e-07842236
        zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg 36
                    e + C+ ++e  + l+C+ ++  lC  C  + H+ 
  XP_010907078.1  8 ERTPCDYCGETAAVLYCRADDARLCLLCDRQVHSA 42
                    6789******99*******************9954 PP
2CCT65.21.9e-22416459144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     R +a+lRYkeKrktR+++K+irYesRK +A++R+RvKGrFvk++
  XP_010907078.1 416 RGNAMLRYKEKRKTRRYDKHIRYESRKLRADTRKRVKGRFVKST 459
                     7789**************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.442749IPR000315B-box-type zinc finger
SMARTSM003361.3E-12754IPR000315B-box-type zinc finger
PfamPF006431.4E-5849IPR000315B-box-type zinc finger
CDDcd000219.79E-91053No hitNo description
PROSITE profilePS501198.7175096IPR000315B-box-type zinc finger
SMARTSM003363.55596IPR000315B-box-type zinc finger
PROSITE profilePS5101714.961416458IPR010402CCT domain
PfamPF062032.7E-16416458IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MGEEKRSERT PCDYCGETAA VLYCRADDAR LCLLCDRQVH SANALARKHV RSLACDNCGA  60
QPAAACCAAD GLALCPDCDC DCDAHGGATA HPRTSLEGFS GCPPALDLAA SWGVDLAGKE  120
AASPLHSAPD KLFSDWPSLD SILAGDPVSR ELYVPCAPEI PAGPKRQKIP VRKQALFQQL  180
TELVKVDSAA ALLPPDLSPR TPCRTVTGGS EDDRGSSQPM LYTSLLMLPP SGCAELKGND  240
RLVEDEDLLW DRGPTDHSAQ IWDFNLRRSR DRIESSSLEI RYDTSSGGFI IKSYSDLLKE  300
NSFATTKILK DIYNANCPSA NEDILSSNIC HIPSQNLSTV NTTSKWKSNS NNSTVNGPTA  360
PGNYASTTVT PLCSSSQDPG PGGDARQIIF GKQPLLRNET VKETKMVDSE LLAQNRGNAM  420
LRYKEKRKTR RYDKHIRYES RKLRADTRKR VKGRFVKSTE AGDLGNDG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907078.10.0zinc finger protein CONSTANS-LIKE 14
TrEMBLA0A2H3YN680.0A0A2H3YN68_PHODC; zinc finger protein CONSTANS-LIKE 13-like
STRINGXP_008801132.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP45042026
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33500.15e-58B-box type zinc finger protein with CCT domain