PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907513.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 473aa    MW: 52109.9 Da    PI: 7.4514
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907513.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17160209155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  XP_010907513.1 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 209
                     78*******************......55************************997 PP
2AP242.12.1e-13252302155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV+ +k  grW+A+   +     +k+++lg f+++ eAa+a+++a+ k +g
  XP_010907513.1 252 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEIEAARAYDKAAIKCNG 302
                     89********.7******5553..2.26**********99**********99776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.3E-9160209IPR001471AP2/ERF domain
SuperFamilySSF541717.19E-16160217IPR016177DNA-binding domain
CDDcd000184.09E-11161216No hitNo description
Gene3DG3DSA:3.30.730.103.3E-17161217IPR001471AP2/ERF domain
PROSITE profilePS5103217.886161217IPR001471AP2/ERF domain
SMARTSM003801.7E-31161223IPR001471AP2/ERF domain
PfamPF008475.1E-9252302IPR001471AP2/ERF domain
CDDcd000186.46E-25252312No hitNo description
SuperFamilySSF541718.5E-17252311IPR016177DNA-binding domain
PROSITE profilePS5103215.712253310IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.3E-15253310IPR001471AP2/ERF domain
SMARTSM003801.0E-31253316IPR001471AP2/ERF domain
PRINTSPR003676.5E-6254265IPR001471AP2/ERF domain
PRINTSPR003676.5E-6292312IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 473 aa     Download sequence    Send to blast
MMMLDLNLAS SGESLAFQEK PLPDEDSGTS NSSVLNAEAS SNAPDDDSCS TRPTAGFQFG  60
ILRVSASAEG ENEMEEEIKG RVNNVSLESN FLTRQLFPPA SPAVPEWPQL PAVAASSSAS  120
SRQHLLDLRF SQSGNPADVR VLQQQQHVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAQAAARAY DRAAIKFRGV DADINFNLVD YEEDLKQTRN LTKEEFVHIL  240
RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKYIYL GLFDSEIEAA RAYDKAAIKC  300
NGRDAVTNFE PSTYEGELLT EANSEATGHD VDLNLRISQP VAHSPKKDHN SIGIQFHYGL  360
LESSDAKKVT IDSTSSQLAG QPHHVWTAQR PALFPTIEEG AREKRLEVGS QALPAWAWQM  420
HGPTPLPLFS SAASSGFSTT AVTSAHPSSL PPPSATLHSQ FSLPAPSNFR FRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907513.10.0APETALA2-like protein 1 isoform X1
SwissprotB8AXC31e-138AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2H3ZP210.0A0A2H3ZP21_PHODC; AP2-like ethylene-responsive transcription factor TOE3 isoform X1
STRINGXP_008789029.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24483890
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.31e-110related to AP2.7