PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907514.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family AP2
Protein Properties Length: 458aa    MW: 50368 Da    PI: 8.0519
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907514.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.8e-17160209155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                     s+y+GV++++++grW+++I+d      + k+++lg f+ta+ Aa+a+++a+ k++g
  XP_010907514.1 160 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAQAAARAYDRAAIKFRG 209
                     78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541717.19E-16160217IPR016177DNA-binding domain
PfamPF008472.2E-9160209IPR001471AP2/ERF domain
SMARTSM003801.7E-31161223IPR001471AP2/ERF domain
CDDcd000183.54E-11161216No hitNo description
Gene3DG3DSA:3.30.730.103.1E-17161217IPR001471AP2/ERF domain
PROSITE profilePS5103217.886161217IPR001471AP2/ERF domain
CDDcd000186.58E-13252297No hitNo description
SuperFamilySSF541711.44E-6252296IPR016177DNA-binding domain
SMARTSM003803.9E-13253301IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
MMMLDLNLAS SGESLAFQEK PLPDEDSGTS NSSVLNAEAS SNAPDDDSCS TRPTAGFQFG  60
ILRVSASAEG ENEMEEEIKG RVNNVSLESN FLTRQLFPPA SPAVPEWPQL PAVAASSSAS  120
SRQHLLDLRF SQSGNPADVR VLQQQQHVKK SRRGPRSRSS QYRGVTFYRR TGRWESHIWD  180
CGKQVYLGGF DTAQAAARAY DRAAIKFRGV DADINFNLVD YEEDLKQTRN LTKEEFVHIL  240
RRQSTGFSRG SSKYRGVTLH KCGRWEARMG QFLGKKAYDK AAIKCNGRDA VTNFEPSTYE  300
GELLTEANSE ATGHDVDLNL RISQPVAHSP KKDHNSIGIQ FHYGLLESSD AKKVTIDSTS  360
SQLAGQPHHV WTAQRPALFP TIEEGAREKR LEVGSQALPA WAWQMHGPTP LPLFSSAASS  420
GFSTTAVTSA HPSSLPPPSA TLHSQFSLPA PSNFRFRS
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor (By similarity). Involved in spikelet transition. Regulator of starch biosynthesis especially during seed development (e.g. endosperm starch granules); represses the expression of type I starch synthesis genes. Prevents lemma and palea elongation as well as grain growth (By similarity). {ECO:0000250|UniProtKB:P47927, ECO:0000250|UniProtKB:Q2TQ34}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00615PBMTransfer from AT2G28550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907514.10.0APETALA2-like protein 1 isoform X2
SwissprotB8AXC31e-123AP21_ORYSI; APETALA2-like protein 1
TrEMBLA0A2H3XUP70.0A0A2H3XUP7_PHODC; ethylene-responsive transcription factor RAP2-7-like isoform X2
STRINGXP_008789029.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28550.11e-99related to AP2.7