PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010907586.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bZIP

Protein Properties

Length: 493aa MW: 54213.7 Da PI: 6.8864

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907586.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	30.8	6.3e-10	183	214	4	35
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekv 35 k rr+++NReAAr+sR+RKka++++Le XP_010907586.1 183 AKTLRRLAQNREAARKSRLRKKAYVQQLESSR 214 6889************************9743 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	3.4E-7	180	256	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	1.6E-7	182	226	No hit	No description
PROSITE profile	PS50217	9.324	182	226	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	4.9E-7	183	223	IPR004827	Basic-leucine zipper domain
CDD	cd14708	9.36E-24	184	236	No hit	No description
SuperFamily	SSF57959	6.88E-7	184	227	No hit	No description
PROSITE pattern	PS00036	0	187	202	IPR004827	Basic-leucine zipper domain
Pfam	PF14144	4.2E-31	264	339	IPR025422	Transcription factor TGA like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 493 aa Download sequence Send to blast
MVQGGEDSGM ANHRVGETSL SNSGPSNQTP TYGIHGTKPA ATNFFDQGGT GYFGELEEAL 60 MQGVDGIRSD GGGKDYFTSR LPTLEIFPSW PMRFQQNPRG NSQSAGSTDS GSAQVTISQL 120 ESESPVSRKA FSEQSADQKQ QQQGMMASDA SRAGATPNYQ QGAQEKKKMG GSTTGKDTKM 180 LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIRLQQL EQELQRARSQ GLFLGGGSAS 240 GDISSGAAMF DMEYNRWLDD TSKHMSELRG GLQAHLPDSN LAITVDECIA HYDELFRLKG 300 VAAKSDVFHL LTGMWTTPAE RCFLWMGGFK PSELLKILMP QLDPLTEQQL MGICNLQQSS 360 QQAEEALSQG LEQLHQSLAD TVASGSLSDG TDITNYMGHM AIALGKLANL EGFIQQADNL 420 RQQTIHQMRR ILTIRQAARC FLAIGEYYSR LRALSSLWAS RPQENLITND SVCPTTTDLQ 480 IVHHPIHHHF SAF

Sequence ? help Back to Top

Protein Sequence Length: 493 aa Download sequence Send to blast

MVQGGEDSGM ANHRVGETSL SNSGPSNQTP TYGIHGTKPA ATNFFDQGGT GYFGELEEAL  60
MQGVDGIRSD GGGKDYFTSR LPTLEIFPSW PMRFQQNPRG NSQSAGSTDS GSAQVTISQL  120
ESESPVSRKA FSEQSADQKQ QQQGMMASDA SRAGATPNYQ QGAQEKKKMG GSTTGKDTKM  180
LDAKTLRRLA QNREAARKSR LRKKAYVQQL ESSRIRLQQL EQELQRARSQ GLFLGGGSAS  240
GDISSGAAMF DMEYNRWLDD TSKHMSELRG GLQAHLPDSN LAITVDECIA HYDELFRLKG  300
VAAKSDVFHL LTGMWTTPAE RCFLWMGGFK PSELLKILMP QLDPLTEQQL MGICNLQQSS  360
QQAEEALSQG LEQLHQSLAD TVASGSLSDG TDITNYMGHM AIALGKLANL EGFIQQADNL  420
RQQTIHQMRR ILTIRQAARC FLAIGEYYSR LRALSSLWAS RPQENLITND SVCPTTTDLQ  480
IVHHPIHHHF SAF

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator involved in defense response (By similarity). Acts as transcriptional activator in vitro (PubMed:22353606). {ECO:0000250\|UniProtKB:Q7X993, ECO:0000269\|PubMed:22353606}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00131	DAP	Transfer from AT1G08320	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907586.1	0.0	transcription factor TGAL5
Swissprot	Q5N7C7	0.0	LG2_ORYSJ; Transcription factor LG2
TrEMBL	A0A2H3YWG1	0.0	A0A2H3YWG1_PHODC; transcription factor LG2
STRING	XP_008787868.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3809	31	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08320.3	1e-137	bZIP family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Chern M, et al. A rice transient assay system identifies a novel domain in NRR required for interaction with NH1/OsNPR1 and inhibition of NH1-mediated transcriptional activation. Plant Methods, 2012. 8(1): p. 6 [PMID:22353606] Chern M, et al. Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins. BMC Genomics, 2014. 15: p. 461 [PMID:24919709]