PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907680.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GRAS
Protein Properties Length: 539aa    MW: 60378.3 Da    PI: 5.3553
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907680.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS456.12.1e-1391695391374
            GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                     l+e+L++cA+av+++d++  ++l+ +l++++s +g+p+qR+ ay++e+L arl++s+s++ykal+++e +   ss+ l++++++++v+P++kf++
  XP_010907680.1 169 LKETLIACARAVADNDAQVMDWLIPELRQMVSVSGEPIQRVGAYMLEGLIARLSSSGSSIYKALKCKEPT---SSDLLSYMHILYDVCPYFKFAY 260
                     5789*****************************************************************9...9********************* PP

            GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrled 188
                     l aN aI ea+++e++vHiiDf+i qG QW++LlqaLa+Rp+gpp++RiTg++++ s   +   l+ +g+rL +fAe++ vpfef++ +  ++ d
  XP_010907680.1 261 LSANGAIAEALKNEDKVHIIDFQIAQGSQWMTLLQALAARPGGPPHVRITGIDDSMSAyaRGGGLHIVGQRLFRFAESCSVPFEFHA-ADVSCCD 354
                     ******************************************************888789999************************.7889*** PP

            GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseeri 283
                     le+++L v+pgEalaVn+ +qlh+++desvs+e++rd++L++vkslsP+vv++veqe+++n++++++rf+e+l+yy+a+f+s++++lpr+s+eri
  XP_010907680.1 355 LEVKDLGVHPGEALAVNFPFQLHHVPDESVSTENHRDRILRMVKSLSPQVVTLVEQESNTNTAPLFQRFVETLNYYTAIFESIDVTLPRDSKERI 449
                     *********************************************************************************************** PP

            GRAS 284 kvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                     +vE+++l+r+ivn++acegaer+erhe ++kW++r+++aGF+p+pls  +++++k+ll+k+ ++ y++ee++g l+lgWk+r+L + SaWr
  XP_010907680.1 450 NVEQHCLARDIVNIIACEGAERVERHELFGKWKSRFTMAGFGPYPLSPLVNATIKSLLAKYCEN-YTLEERDGVLYLGWKNRRLSVSSAWR 539
                     **************************************************************55.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098569.649143520IPR005202Transcription factor GRAS
PfamPF035147.3E-137169539IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 539 aa     Download sequence    Send to blast
MQASNKCGSS DESPELYLQH NSMPRREEEF RLRPQNYQSF DQLFSDNGSL SQSCPLQASH  60
VQYCTRDSAL TTACYALRDS PSTLSFSPSF GSPVSQQDYH SDNINGSPLN VSCLTEDPAD  120
LKHKLRELEV AMLGPDFDTI DSSESSFRSY LMSKPEMWKQ MMGIPEGDLK ETLIACARAV  180
ADNDAQVMDW LIPELRQMVS VSGEPIQRVG AYMLEGLIAR LSSSGSSIYK ALKCKEPTSS  240
DLLSYMHILY DVCPYFKFAY LSANGAIAEA LKNEDKVHII DFQIAQGSQW MTLLQALAAR  300
PGGPPHVRIT GIDDSMSAYA RGGGLHIVGQ RLFRFAESCS VPFEFHAADV SCCDLEVKDL  360
GVHPGEALAV NFPFQLHHVP DESVSTENHR DRILRMVKSL SPQVVTLVEQ ESNTNTAPLF  420
QRFVETLNYY TAIFESIDVT LPRDSKERIN VEQHCLARDI VNIIACEGAE RVERHELFGK  480
WKSRFTMAGF GPYPLSPLVN ATIKSLLAKY CENYTLEERD GVLYLGWKNR RLSVSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-6517653825377Protein SCARECROW
5b3h_D7e-6517653825377Protein SCARECROW
5hyz_A5e-651715396375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907680.10.0chitin-inducible gibberellin-responsive protein 2
RefseqXP_029117203.10.0chitin-inducible gibberellin-responsive protein 2
SwissprotQ8GVE10.0CIGR2_ORYSJ; Chitin-inducible gibberellin-responsive protein 2
TrEMBLA0A2H3XAK50.0A0A2H3XAK5_PHODC; scarecrow-like protein 21
STRINGXP_008780980.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151337117
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.20.0GRAS family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]
  3. Tanabe S, et al.
    The elicitor-responsive gene for a GRAS family protein, CIGR2, suppresses cell death in rice inoculated with rice blast fungus via activation of a heat shock transcription factor, OsHsf23.
    Biosci. Biotechnol. Biochem., 2016. 80(1): p. 145-51
    [PMID:26287768]