PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907711.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 310aa    MW: 34024.4 Da    PI: 8.9142
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907711.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA102.34.5e-32143199158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     d p+YVNaKQ+++Il+RRq+Rak+e+e+kl +k rkpylheSRh+hA+rR+Rg+gGrF
  XP_010907711.1 143 DGPIYVNAKQFHGILRRRQARAKAERENKL-IKVRKPYLHESRHQHAMRRARGCGGRF 199
                     57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.3E-35141202IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.751142202IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.4E-28145199IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.4E-24145167IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860147167IPR018362CCAAT-binding factor, conserved site
PRINTSPR006162.4E-24176199IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MMQTAIAFKN HGGLGENYVS QPSQATLMPW WIGSQPLYGE PFGQLKSFTE EHPHGEGHLP  60
AAPRQMHHAV NPGPGPAVPE KGGDGMTKFL LFPDFKDSGK EQKAQQHSGI ISLQSCLPEH  120
QGHFELGVGQ SVQGRMLLPL TADGPIYVNA KQFHGILRRR QARAKAEREN KLIKVRKPYL  180
HESRHQHAMR RARGCGGRFL SMKSEGTGQS GNINTKVRDE VPAARHATSP SSEVLQSDSG  240
NINSASGGSS LSGSEVTSMY ARENDHFQFI EHLHPSVFHP LPNMMDGEHP TRIHTKWATA  300
ADGCCDLLKV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-19143207266NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907709.10.0nuclear transcription factor Y subunit A-10 isoform X1
TrEMBLA0A2H3XRS61e-176A0A2H3XRS6_PHODC; nuclear transcription factor Y subunit A-10-like
STRINGXP_008787766.11e-176(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30500.15e-22nuclear factor Y, subunit A7