PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010907767.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 820aa MW: 89959.7 Da PI: 6.6883

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907767.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	86.8	3.3e-27	85	169	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 +Yn+YA +vGF+vr+s+ ++s r+g+i++r+fvCskeg+ ++ ++ +++r+r++tr+gC a+l+vkk+++ +w vtk+++eHnHe XP_010907767.1 85 YYNAYACRVGFRVRVSRCHRSMRDGSIICRRFVCSKEGFYMQKGQT--RNKRQRMVTRVGCMAMLVVKKQTSCNWLVTKFVKEHNHE 169 8**************************************99988..99**********************************8 PP
2	FAR1	76.2	6.5e-24	233	315	2	88
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHe 88 fY +YAk++GF+vr+sk ++ r+g+i++r++vCskeg+ ++ + ++r+ra tr+gC a+l+vkk ++g w+v+++e+eHnH+ XP_010907767.1 233 FYYAYAKDMGFTVRISKCRRA-RDGSIICRRLVCSKEGYYVRKYGR---TKRSRALTRVGCLARLVVKKLDSGIWVVANFEKEHNHP 315 9**************9998.8999*********9987666...99*********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.8E-24	85	169	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.8E-20	233	315	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 820 aa Download sequence Send to blast
MSSLEARVLR PERDLEEDES PNSDLGAIGM ECSDEAMDGA ETPTGKDGEM IESYDRRELI 60 VNEGDPDAEP YVGMEFDSEE AARAYYNAYA CRVGFRVRVS RCHRSMRDGS IICRRFVCSK 120 EGFYMQKGQT RNKRQRMVTR VGCMAMLVVK KQTSCNWLVT KFVKEHNHEP VAPTQVDLKP 180 RVLVEVKKVE DCLDKKENPV ERGLVVATLP QGTSDLEPYE GMQFQSEEAA RTFYYAYAKD 240 MGFTVRISKC RRARDGSIIC RRLVCSKEGY YVRKYGRTKR SRALTRVGCL ARLVVKKLDS 300 GIWVVANFEK EHNHPPFVVG NELSYQPPKP TRRINCGACA SLPVPSAAVL NADEGELRDS 360 QSSVNWRFNR LHQEGIRFAE EGATSVEIFN VAMFALREAT QKVIAAKKDT DMIPQLGNLV 420 SGGNTDHVSW TNDSVNQITM DNQQCSNEGR QVASSSGPML IQQPLNLVVI APGLPNESGQ 480 APSATNFPNG QAVRGGLENQ RLNMTIPVSV RKQLSPTARR LDGNGLPGMN ISAGRKRKHS 540 TAVDGMDSFM TIQDVGERDS KQDGAANQPQ GWNILGMAQA DSHCRNGGMS TSMALSEAQV 600 AALQAVAEAF NVPTMGATSS FALPIKVLPL SDKLSEGNKG YLLPCDDSSQ SLEVLSHQYE 660 ETPKTPGPNP LVHAAAIAAG ARIATPEVAA SLIKAVQSRT AVHFRSGGSL PKLPVRIGGD 720 SLAQSVVHLN TSNNQYFPTE EPSIPFPVTA VLPDVLLPGD HQESVTSEVR EMQMTMAEHA 780 DLLNSDPREE QNILYHCMGG ESQTLVKMQH PLQHAGFSAD

Sequence ? help Back to Top

Protein Sequence Length: 820 aa Download sequence Send to blast

MSSLEARVLR PERDLEEDES PNSDLGAIGM ECSDEAMDGA ETPTGKDGEM IESYDRRELI  60
VNEGDPDAEP YVGMEFDSEE AARAYYNAYA CRVGFRVRVS RCHRSMRDGS IICRRFVCSK  120
EGFYMQKGQT RNKRQRMVTR VGCMAMLVVK KQTSCNWLVT KFVKEHNHEP VAPTQVDLKP  180
RVLVEVKKVE DCLDKKENPV ERGLVVATLP QGTSDLEPYE GMQFQSEEAA RTFYYAYAKD  240
MGFTVRISKC RRARDGSIIC RRLVCSKEGY YVRKYGRTKR SRALTRVGCL ARLVVKKLDS  300
GIWVVANFEK EHNHPPFVVG NELSYQPPKP TRRINCGACA SLPVPSAAVL NADEGELRDS  360
QSSVNWRFNR LHQEGIRFAE EGATSVEIFN VAMFALREAT QKVIAAKKDT DMIPQLGNLV  420
SGGNTDHVSW TNDSVNQITM DNQQCSNEGR QVASSSGPML IQQPLNLVVI APGLPNESGQ  480
APSATNFPNG QAVRGGLENQ RLNMTIPVSV RKQLSPTARR LDGNGLPGMN ISAGRKRKHS  540
TAVDGMDSFM TIQDVGERDS KQDGAANQPQ GWNILGMAQA DSHCRNGGMS TSMALSEAQV  600
AALQAVAEAF NVPTMGATSS FALPIKVLPL SDKLSEGNKG YLLPCDDSSQ SLEVLSHQYE  660
ETPKTPGPNP LVHAAAIAAG ARIATPEVAA SLIKAVQSRT AVHFRSGGSL PKLPVRIGGD  720
SLAQSVVHLN TSNNQYFPTE EPSIPFPVTA VLPDVLLPGD HQESVTSEVR EMQMTMAEHA  780
DLLNSDPREE QNILYHCMGG ESQTLVKMQH PLQHAGFSAD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907767.1	0.0	uncharacterized protein LOC105034339
Refseq	XP_010907775.1	0.0	uncharacterized protein LOC105034339
TrEMBL	A0A2H3X553	0.0	A0A2H3X553_PHODC; uncharacterized protein LOC103698264
STRING	XP_008778479.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP9031	33	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G06250.1	3e-40	FAR1-related sequence 7