PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907773.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family ARR-B
Protein Properties Length: 592aa    MW: 66314.6 Da    PI: 4.8933
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907773.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like80.71.7e-25200253155
         G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                     k+r++W+ +LH++Fv+av+q+ G +k  Pk+il+lm+++gLt+e+v+SHLQkYRl
  XP_010907773.1 200 KARVVWSVDLHQKFVNAVNQI-GFDKVGPKKILDLMNIPGLTRENVASHLQKYRL 253
                     68*******************.9*******************************8 PP
2Response_reg78.62.2e-26191271109
                     EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTT CS
    Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaG 93 
                     vl+vdD+p+ +++l+++l+k  y ev+++  ++ ale+l+e++  +D+++ D++mp+mdG++ll++   e  +lp+i+++  ge + + + ++ G
  XP_010907773.1  19 VLVVDDDPTWLKILEKMLRKCSY-EVTTCGLARVALEMLRERKdhFDIVISDVNMPDMDGFKLLEHVGLEM-DLPVIMMSIDGETSRVMKGVQHG 111
                     89*********************.***************777777**********************6644.8********************** PP

                     ESEEEESS--HHHHHH CS
    Response_reg  94 akdflsKpfdpeelvk 109
                     a d+l Kp+ ++el++
  XP_010907773.1 112 ACDYLLKPVRMKELRN 127
                     *************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0363926.4E-1522582IPR017053Response regulator B-type, plant
SuperFamilySSF521721.57E-3416139IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.0E-4316153No hitNo description
SMARTSM004482.2E-3117129IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011042.60318133IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.1E-2319128IPR001789Signal transduction response regulator, receiver domain
CDDcd001565.92E-2920132No hitNo description
SuperFamilySSF466896.09E-18197257IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.2E-27199258IPR009057Homeodomain-like
TIGRFAMsTIGR015572.3E-22200253IPR006447Myb domain, plants
PfamPF002499.3E-8202252IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 592 aa     Download sequence    Send to blast
MANPPASTRT EAFPVGLRVL VVDDDPTWLK ILEKMLRKCS YEVTTCGLAR VALEMLRERK  60
DHFDIVISDV NMPDMDGFKL LEHVGLEMDL PVIMMSIDGE TSRVMKGVQH GACDYLLKPV  120
RMKELRNIWQ HVYRKKMHEV KEIEGHYINE DIQIMKIGSD DFEDRHVSSG ADINYVRKRK  180
DVDNKEHSDQ EFSDPATVKK ARVVWSVDLH QKFVNAVNQI GFDKVGPKKI LDLMNIPGLT  240
RENVASHLQK YRLYLSRLQK QNEGRTSSGN LQSDFSSKDV AGNFDVLSST QMQPSGVSSK  300
FICTGQKIQA QGIIPDDHAD DFKSSLSLQV TGSKQALVGD IPDSQGVISV SRLGILLPFK  360
DMIPDAGKKS LEPAISRNQS WSGSIPVMQF MQHPRHDHEC CCLIEAYSCL PKPDQEQVFD  420
HFDTPPSVIS NTCNTENDIS GLLEFKLVHT NHRSSDTKTA SQLSCMTDTT SAQVDSGSSN  480
TQDYGVAFGI DGLTNIKDYY HTQTSSYLTP PSGELSLKNE TDLVSSPEDL QFCSPQGIGS  540
FENVGFNSME IFQYDDSTSV TEVHSNWYDG LEFNSDYLYD SVDPVIDECL FA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A1e-17199258463ARR10-B
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specific DNA sequence. Functions as a response regulator involved in His-to-Asp phosphorelay signal transduction system. Phosphorylation of the Asp residue in the receiver domain activates the ability of the protein to promote the transcription of target genes. May directly activate some type-A response regulators in response to cytokinins. {ECO:0000250|UniProtKB:Q940D0}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907773.10.0two-component response regulator ORR26 isoform X1
SwissprotQ5N6V80.0ORR26_ORYSJ; Two-component response regulator ORR26
TrEMBLA0A2H3YDP80.0A0A2H3YDP8_PHODC; Two-component response regulator
STRINGXP_008797265.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP59003752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67710.11e-124response regulator 11
Publications ? help Back to Top
  1. Du L, et al.
    The two-component signal system in rice (Oryza sativa L.): a genome-wide study of cytokinin signal perception and transduction.
    Genomics, 2007. 89(6): p. 697-707
    [PMID:17408920]