PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010907864.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB_related
Protein Properties Length: 118aa    MW: 13621.5 Da    PI: 6.5104
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010907864.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.55.7e-123775444
                     S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     +T+eE++l+ +++++lG + W++Ia++++  Rt++++ s+w
   XP_010907864.1 37 MTQEEEDLISRLHHLLGDR-WELIAKRLP-CRTAEEVESYW 75
                     7****************99.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.8672982IPR017930Myb domain
SMARTSM007175.0E-63381IPR001005SANT/Myb domain
CDDcd001674.92E-93676No hitNo description
PfamPF002495.2E-113776IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.3E-123876IPR009057Homeodomain-like
SuperFamilySSF466894.68E-83880IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 118 aa     Download sequence    Send to blast
MLGIKIASLF SFVHCTYGEM QELDSANHGG KKQWPSMTQE EEDLISRLHH LLGDRWELIA  60
KRLPCRTAEE VESYWKIKGR GEFENNKIYK PVCTRLSPSF KFTMDEPLED TKPSQSGS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010907840.12e-69MYB-like transcription factor ETC2 isoform X2
RefseqXP_019703865.24e-69transcription factor MYB48 isoform X1
TrEMBLA0A3Q0IHY73e-62A0A3Q0IHY7_PHODC; myb-related protein Zm38-like isoform X1
STRINGXP_008806970.11e-53(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01060.33e-17CAPRICE-like MYB3