PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010907870.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 334aa MW: 37848.3 Da PI: 9.8043

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010907870.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	102.9	1.9e-32	59	112	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtpeLH +Fv+ave+LGG+++AtPk +lelmkvkgL+++hvkSHLQ+YR+ XP_010907870.1 59 PRLRWTPELHLCFVQAVERLGGQDRATPKMVLELMKVKGLSIAHVKSHLQMYRS 112 9****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	1.1E-30	55	113	IPR009057	Homeodomain-like
PROSITE profile	PS51294	13.907	55	115	IPR017930	Myb domain
SuperFamily	SSF46689	6.45E-16	56	113	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.0E-25	58	114	IPR006447	Myb domain, plants
Pfam	PF00249	1.0E-8	60	111	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 334 aa Download sequence Send to blast
MRSMSSESSR GRPSKVGEVE EDGEDNLRNG GSSSNSTVEE SERKPSSGTV RQYVRSKNPR 60 LRWTPELHLC FVQAVERLGG QDRATPKMVL ELMKVKGLSI AHVKSHLQMY RSKKIDESVI 120 ADPWSVMKGT KQHIYNLGHL PMLHGCHQRP TIPNLRSDGS SWFGHRNWTQ NPVLSRAMNS 180 TVGSRSHGSI NEMIFRGSDR LKSNQDFHIN TSSSNHQAIC ELREATGESH LLHNCRLGTT 240 QYQAEERGAY LQERGLTGPE GQSSERWKAN DQGPDLNLSL HIGPRQEKKQ QRRWEEELES 300 SLSLSLFGPS RMERCSRDVE KGLKSWHVGG RSWQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	5e-19	60	114	4	58	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010907870.1	0.0	transcription activator GLK2 isoform X5
TrEMBL	A0A3Q0HLM1	1e-158	A0A3Q0HLM1_PHODC; transcription repressor KAN1-like isoform X2
STRING	GSMUA_Achr7P22410_001	4e-82	(Musa acuminata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	4e-43	G2-like family protein