PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908022.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family B3
Protein Properties Length: 437aa    MW: 49542 Da    PI: 10.4606
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908022.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B346.47.1e-1511100198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                     ffkv+     +k++ l++p +f ++  gk     + +l++ +g  W v +  r++++   ++++GW+ Fv ++ + +gDf+vF +dg+ +f   v
  XP_010908022.1  11 FFKVM--MGDFKTS-LRIPTPFKKRLRGK--LRSKSVLRSARGGIWHVAM--RGSDRDgWFFQRGWEAFVADHAVAVGDFLVFVFDGDIGF--DV 96 
                     77777..5566666.9******9999777..3347899************..6666666889**********************9998777..67 PP

                     EEE- CS
              B3  95 kvfr 98 
                     k++ 
  XP_010908022.1  97 KIYG 100
                     7665 PP
2B358.99.2e-191892721299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +++ +++p   ++e+g+   +++ ++l+d+ g sW v++  ++++ r+v+++GW++F k n L++gD++vF+++++ +   +v++fr+
  XP_010908022.1 189 RRSYMTIPMALVREFGLT--GKQLVILRDPVGSSWPVRIASWRSG-RMVFATGWSDFYKGNCLEDGDVCVFEFVQNASL-IHVHIFRA 272
                     56789**********988..6669***************989887.557888*********************997555.79*99996 PP
3B361.41.5e-193244071299
                     HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     +s+ +++p   a+eh++k +  k+ +l d+ g+sW+vk+  ++ +gr+vl++GW eF k n+LkegD++vF++++  +    v+++rk
  XP_010908022.1 324 RSHFMTVPSYLAREHKLKMK--KQTILHDPCGKSWQVKI-RERADGRVVLATGWHEFSKGNHLKEGDTCVFEFIR-GGNAIQVHIYRK 407
                     67889**********98854..46999************.4777888*************************998.555579999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.3E-188104IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.9E-208104IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.2668102IPR003340B3 DNA binding domain
CDDcd100175.80E-141099No hitNo description
SMARTSM010192.8E-911102IPR003340B3 DNA binding domain
PfamPF023621.7E-111198IPR003340B3 DNA binding domain
SuperFamilySSF1019362.88E-24178273IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.5E-23178273IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.227178273IPR003340B3 DNA binding domain
CDDcd100179.40E-20179271No hitNo description
SMARTSM010191.1E-18181273IPR003340B3 DNA binding domain
PfamPF023628.3E-17189272IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.0E-23307408IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019364.45E-22309408IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.988313408IPR003340B3 DNA binding domain
SMARTSM010193.2E-13316408IPR003340B3 DNA binding domain
CDDcd100173.60E-19323406No hitNo description
PfamPF023624.7E-17324407IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 437 aa     Download sequence    Send to blast
MGKAFRDRAS FFKVMMGDFK TSLRIPTPFK KRLRGKLRSK SVLRSARGGI WHVAMRGSDR  60
DGWFFQRGWE AFVADHAVAV GDFLVFVFDG DIGFDVKIYG KNGCEKEAVV SPKKDPSETL  120
VQCLPANPNR PSTATAERRK QFIFGKTSSG TFQATRRPSI KVERESVLEA ASSTKFIYPH  180
FIATCRKSRR SYMTIPMALV REFGLTGKQL VILRDPVGSS WPVRIASWRS GRMVFATGWS  240
DFYKGNCLED GDVCVFEFVQ NASLIHVHIF RAKEVAAEMD QKPGECLLLD KKRMSDDDKR  300
NVVQITSSFK SGHSNFIACW RKSRSHFMTV PSYLAREHKL KMKKQTILHD PCGKSWQVKI  360
RERADGRVVL ATGWHEFSKG NHLKEGDTCV FEFIRGGNAI QVHIYRKDES NTTAGNGLKE  420
EINDQKQTLN CSLTLLS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908022.10.0B3 domain-containing protein Os01g0723500
TrEMBLA0A2H3Y2Y30.0A0A2H3Y2Y3_PHODC; putative B3 domain-containing protein Os03g0621600
STRINGXP_008792612.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP3747333
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31640.16e-19B3 family protein