PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908090.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 293aa MW: 31740.9 Da PI: 6.4311

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908090.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	110.1	1.1e-34	30	84	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt eLH+rFv+av+qLGG++kAtPkti+++m+vkgLtl+h+kSHLQkYRl XP_010908090.1 30 KPRLRWTAELHDRFVDAVNQLGGPDKATPKTIMKTMGVKGLTLYHLKSHLQKYRL 84 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	5.6E-33	27	85	IPR009057	Homeodomain-like
PROSITE profile	PS51294	12.91	27	87	IPR017930	Myb domain
SuperFamily	SSF46689	7.7E-18	30	86	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.1E-24	30	85	IPR006447	Myb domain, plants
Pfam	PF00249	1.8E-9	32	83	IPR001005	SANT/Myb domain
Pfam	PF14379	4.4E-24	129	172	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010628	Biological Process	positive regulation of gene expression
GO:0016036	Biological Process	cellular response to phosphate starvation
GO:0005634	Cellular Component	nucleus
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 293 aa Download sequence Send to blast
MYPKGGEFNG SLDGASLLRD ASHLLTNDPK PRLRWTAELH DRFVDAVNQL GGPDKATPKT 60 IMKTMGVKGL TLYHLKSHLQ KYRLGKQSSK ESSENSKGAA GVVENQGTGS SSSSPSSRLM 120 AQDLNDGCNE AMRVQMELQR QLHEQLEVQR HLQIRIEAQG KYLHSMLERA CNALINPNLA 180 LVGLASIRCD LSELPNVETD DCLGHPHVSL KLPSLSEIAA ACMEEKSLNR AIAQIAECSV 240 DSCLTSTESP GRAPVLGSQA AALRKGLCPL LGTDEAHAWD GDVHEDGQWV SSI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	1e-20	30	86	1	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Acts redundantly with PHR1 as a key component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). {ECO:0000269\|PubMed:26586833}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00378	DAP	Transfer from AT3G24120	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908090.1	0.0	protein PHR1-LIKE 2 isoform X2
Swissprot	Q94A57	5e-87	PHL2_ARATH; Protein PHR1-LIKE 2
TrEMBL	A0A3Q0HRP5	1e-151	A0A3Q0HRP5_PHODC; protein PHR1-LIKE 3-like
STRING	XP_008778612.1	1e-150	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G24120.1	1e-79	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]