PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908246.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 544aa    MW: 57905.2 Da    PI: 5.8165
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908246.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.41.9e-30211267259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +DgynWrKYGqK+vk+se +rsYY+Ct ++C +kkkver+  d+++vei+Y+geHnh+
  XP_010908246.1 211 SDGYNWRKYGQKQVKSSESSRSYYKCTNTNCFAKKKVERCP-DGQIVEIIYRGEHNHD 267
                     7****************************************.***************7 PP
2WRKY94.76.5e-30381437259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     +Dgy+WrKYGqK vkg+++p sYYrCt++gCpv+k+ver+++d k+++itYeg+Hnh+
  XP_010908246.1 381 SDGYRWRKYGQKIVKGNPNP-SYYRCTHNGCPVRKHVERASDDAKAIVITYEGTHNHD 437
                     6*******************.9***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.0E-27204269IPR003657WRKY domain
PROSITE profilePS5081121.976205269IPR003657WRKY domain
SuperFamilySSF1182902.09E-24207269IPR003657WRKY domain
SMARTSM007749.4E-33210268IPR003657WRKY domain
PfamPF031063.5E-23212267IPR003657WRKY domain
Gene3DG3DSA:2.20.25.806.3E-31365438IPR003657WRKY domain
SuperFamilySSF1182903.79E-24373437IPR003657WRKY domain
PROSITE profilePS5081129.218375439IPR003657WRKY domain
SMARTSM007744.3E-32380438IPR003657WRKY domain
PfamPF031068.2E-24382437IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MAEKRPCSDA PAEVGGRPPS PTPPPVAEGC PPADPGPDAT PAAKESASEA VEAPNSTAGE  60
HPAAVGADGR SFSQLLAGAM SSPVGSPHAT PIIAVPVDAV RLPVVAVPCF LAPAGLLESP  120
GFSGQFAMTH QAVLATVTAQ AQMQLQAAYP SSSSELVSTS VSQPMSSTNS PVPLQQRPST  180
VPDRVCTPET EQLPSVQKPQ SAHIVVKTTT SDGYNWRKYG QKQVKSSESS RSYYKCTNTN  240
CFAKKKVERC PDGQIVEIIY RGEHNHDPPQ KPRCSKERAQ SGGTTGEHES LELPSSELNE  300
SEPSTCKPEQ ISGNENPARQ LYCSSDCEGD AGMKNEEDIS EETDPKRRLI ESTMNFSRPV  360
LRTVREPKIV VQTACDAGHG SDGYRWRKYG QKIVKGNPNP SYYRCTHNGC PVRKHVERAS  420
DDAKAIVITY EGTHNHDRLA PKNSSDSPAA SLITAATADT GEQLNTSDML SDQKPSKEKQ  480
ADVGSNLEGE RAVELGGEKA LESAQTLLSI GLNSASGEAN RTNSEGVKRP LFSENPATVP  540
VQNS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-24212437877Probable WRKY transcription factor 4
2lex_A2e-24212437877Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908246.10.0probable WRKY transcription factor 4 isoform X2
TrEMBLA0A2H3X6590.0A0A2H3X659_PHODC; probable WRKY transcription factor 4
STRINGXP_008778954.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.16e-69WRKY DNA-binding protein 4