PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908308.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

G2-like

Protein Properties

Length: 311aa MW: 34725.1 Da PI: 8.2195

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908308.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	103.1	1.7e-32	19	72	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH++Fv+a+e+LGG+ekAtPk +l+lm+v gLt++hvkSHLQ+YR XP_010908308.1 19 PRLRWTPDLHHCFVHAIEKLGGQEKATPKLVLQLMDVRGLTISHVKSHLQMYRN 72 8****************************************************5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	11.18	15	75	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	6.3E-31	15	75	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.12E-15	17	74	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.7E-24	19	72	IPR006447	Myb domain, plants
Pfam	PF00249	1.5E-8	20	71	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence Send to blast
MGNCGRNGAV RQYIRSKVPR LRWTPDLHHC FVHAIEKLGG QEKATPKLVL QLMDVRGLTI 60 SHVKSHLQMY RNMRNDMGRQ ELQAKKHLCE AIDGGTDKQD DEDSSPSSKP TKEFQSQFMH 120 SPLPPLKRAR METQAISKSL QCSKEMGERV TSAFCFVDYM QAVAFGRGIK EEGLRWQKDA 180 LETGLLADHR PSKLRVSGHM VEESGPLKSS IPSDQNLISA KELKSDRRYE NGCQSYTSLP 240 SNGLSEEREE VNDCLLSLSL SLHPKQRSNT SSESESSGVI SSSSRSNFSD CSGYSEGPRI 300 NLDLSMSIYG P

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-18	20	74	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908308.1	0.0	protein PHR1-LIKE 3 isoform X2
TrEMBL	A0A3Q0ICF2	1e-156	A0A3Q0ICF2_PHODC; myb family transcription factor PHL8 isoform X3
STRING	XP_008805079.1	1e-155	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2966	35	83

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14600.1	2e-33	G2-like family protein