PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908383.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Dof

Protein Properties

Length: 351aa MW: 37318.7 Da PI: 8.3193

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908383.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	124.2	4.3e-39	53	112	2	61
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 ++++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rk k+s XP_010908383.1 53 QQQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKAKAS 112 68999***************************************************9976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	1.0E-25	50	110	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	8.5E-33	55	111	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	29.236	57	111	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	59	95	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 351 aa Download sequence Send to blast
MIQELLGGMV EERKISIPGS LLIDPSSSSS SSSSISSTSL SSASPSPSNT SEQQQNLRCP 60 RCDSSNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKAK ASPAIPSGAS 120 KSGGTKAKPS PPDLLARSGI IGGLEHELPS SPLFWASPHT SHLMALLRAT TVQNPNPNPP 180 SSSTLNNSVR IKEDGAMIGT HMAADTVGAL PSQGLSLDPL GQLPLAPCGS LWRNNNQYAY 240 HQQPQTQQLQ QHSSNMLLGE VPSSAIQELY QRFKSSANYC NDQLQAVMSN VGCLDSSTSS 300 ATTAMTTTSS TVGTSTSASI LEPIPFSGGE FTYWNPALTW SDLPTTNGAF P

Sequence ? help Back to Top

Protein Sequence Length: 351 aa Download sequence Send to blast

MIQELLGGMV EERKISIPGS LLIDPSSSSS SSSSISSTSL SSASPSPSNT SEQQQNLRCP  60
RCDSSNTKFC YYNNYNLTQP RHFCKTCRRY WTKGGALRNV PIGGGCRKAK ASPAIPSGAS  120
KSGGTKAKPS PPDLLARSGI IGGLEHELPS SPLFWASPHT SHLMALLRAT TVQNPNPNPP  180
SSSTLNNSVR IKEDGAMIGT HMAADTVGAL PSQGLSLDPL GQLPLAPCGS LWRNNNQYAY  240
HQQPQTQQLQ QHSSNMLLGE VPSSAIQELY QRFKSSANYC NDQLQAVMSN VGCLDSSTSS  300
ATTAMTTTSS TVGTSTSASI LEPIPFSGGE FTYWNPALTW SDLPTTNGAF P

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908383.1	0.0	dof zinc finger protein DOF3.4-like
TrEMBL	A0A2H3Y2U9	0.0	A0A2H3Y2U9_PHODC; dof zinc finger protein DOF2.2-like
STRING	XP_008792599.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7710	31	44

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65590.1	2e-33	Dof family protein