PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908498.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MYB
Protein Properties Length: 350aa    MW: 38817.9 Da    PI: 6.8467
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908498.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding621.2e-191461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +lvd+++++G g+Wk  ++  g++R++k+c++rw +yl
   XP_010908498.1 14 KGPWTPEEDNKLVDYIQMHGHGNWKNLPQNAGLNRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding51.42.4e-1667112148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+++++E+ l+++++  lG++ W+ Ia +++ gRt++++k++w+++l
   XP_010908498.1  67 RGKFSEDEERLIIHLHSVLGNK-WSMIATRLP-GRTDNEIKNYWNTHL 112
                      89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.6E-26564IPR009057Homeodomain-like
PROSITE profilePS5129419.457961IPR017930Myb domain
SuperFamilySSF466898.24E-3211108IPR009057Homeodomain-like
SMARTSM007174.5E-161363IPR001005SANT/Myb domain
PfamPF002499.0E-181461IPR001005SANT/Myb domain
CDDcd001674.58E-131661No hitNo description
PROSITE profilePS5129427.95662116IPR017930Myb domain
Gene3DG3DSA:1.10.10.604.0E-2665116IPR009057Homeodomain-like
SMARTSM007179.5E-1666114IPR001005SANT/Myb domain
PfamPF002499.0E-1567112IPR001005SANT/Myb domain
CDDcd001672.90E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MGRSPCCDRD GVKKGPWTPE EDNKLVDYIQ MHGHGNWKNL PQNAGLNRCG KSCRLRWTNY  60
LRPDIKRGKF SEDEERLIIH LHSVLGNKWS MIATRLPGRT DNEIKNYWNT HLRKKLLLMG  120
IDPVTHRPKT GLDLLAILPR LLSAAKNLGN LTTPLDNVLR LQADAANLAR FQILQSLTQL  180
MNTSPPLDTD TSSLMASASL QNYQFSDLLQ MNRQLQGLMN GSLGLPQNQI PMTSGLPGLQ  240
IPQLTNSFQA HPESSSILKE QEMVAQFNGS CSSTEHAMLS NGQSTCPVFN SSAIPTAHST  300
PSLVSTSPEH ASTAQMQDPI NSNASTPFED WEGLNLDGLD NDLSWKDILE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-29141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908498.20.0transcription factor MYB41
SwissprotQ9S9Z22e-83MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A2H3ZST40.0A0A2H3ZST4_PHODC; transcription factor MYB53-like
STRINGXP_008796312.11e-180(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP55293158
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-89myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]