PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908560.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

bHLH

Protein Properties

Length: 247aa MW: 27528.4 Da PI: 10.1738

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908560.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	39.2	1.3e-12	61	105	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h+++E+rRR+riN +++Lr+++P++ K++Ka+ L ++++++k+L XP_010908560.1 61 HSQAEKRRRERINAHLSTLRRMIPNS-----NKMDKASLLGRVIDHVKDL 105 99*********************7.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.51	56	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	6.94E-14	59	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	7.90E-12	61	108	No hit	No description
Gene3D	G3DSA:4.10.280.10	8.6E-14	61	108	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	3.1E-10	61	105	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.7E-12	62	111	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MATRYSANGW AEKGNRSTFP SPSKGSLLLP RPSNSAPAFL GQGSFYPSLC EDERALTLRI 60 HSQAEKRRRE RINAHLSTLR RMIPNSNKMD KASLLGRVID HVKDLKRKAV DASKVSTIPT 120 EANVVTVESH DGGYQNTFSL DDDNLYIKAS LCCDDRPDLF AELIEAFQRL RLRAIRADMT 180 SLGGRIQNVF LLCRKDSSGS ACLNSLKESI KEALDRVASV DMVPSNAFVS KRQKLLQPRF 240 PCSNRSL

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908560.1	0.0	transcription factor bHLH51
TrEMBL	A0A2H3Y3J8	1e-80	A0A2H3Y3J8_PHODC; transcription factor bHLH51-like
STRING	XP_008805006.1	1e-152	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3347	36	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-39	bHLH family protein