PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908582.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WRKY
Protein Properties Length: 640aa    MW: 69462 Da    PI: 6.7037
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908582.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.58.5e-31260317260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     dDgynWrKYGqK+vkgse+prsYY+Ct+++C++kk +ers+ d++++ei+Y+g+H+h+k
  XP_010908582.1 260 DDGYNWRKYGQKHVKGSEYPRSYYKCTHPNCQMKKLLERSH-DGRITEIIYKGRHDHPK 317
                     8****************************************.***************85 PP
2WRKY96.51.8e-30429486159
                     ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                     ldDgy+WrKYGqK+vkg+++p sYY+Ct agCpv+k+ver+++dpk+v++tYeg+Hnh+
  XP_010908582.1 429 LDDGYRWRKYGQKVVKGNPNP-SYYKCTNAGCPVRKHVERASHDPKAVITTYEGKHNHD 486
                     59*******************.9***********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.6E-26253318IPR003657WRKY domain
SuperFamilySSF1182903.53E-24257318IPR003657WRKY domain
SMARTSM007742.6E-33259317IPR003657WRKY domain
PfamPF031062.8E-23260316IPR003657WRKY domain
PROSITE profilePS5081123.468260318IPR003657WRKY domain
Gene3DG3DSA:2.20.25.804.3E-35414488IPR003657WRKY domain
SuperFamilySSF1182902.62E-26421488IPR003657WRKY domain
PROSITE profilePS5081135.611424488IPR003657WRKY domain
SMARTSM007742.0E-35429487IPR003657WRKY domain
PfamPF031062.7E-23430486IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 640 aa     Download sequence    Send to blast
MVDKKMVENL EAETGVLHGA APEVRFEGFG QGNGGGSWEE PAGSADPRVS SLEGARYRSM  60
SPARLPIARS RCLTISSGFS PSALLESPVL VTNMKAEPSP TTGTFNMSLV MNKAVHSERK  120
SSPRDTSSND AHHEGHHGAF EFKPHIRSSM NSGLSPLGAL ASVNPSQQEQ VPAVQVQSQS  180
QAQTSPQLAK DEKETLSSHE LVLSIANMHP PLETFPLAVV PPEVDSDELQ QMKGSEDSIL  240
SLQSDHNGSN LSTVVEKSSD DGYNWRKYGQ KHVKGSEYPR SYYKCTHPNC QMKKLLERSH  300
DGRITEIIYK GRHDHPKPQP SRRLAVGAIS NQGDEKPDSI SSLARPEDKS SISLPFDPND  360
APSPVSASDD DVEIGGGRSS NTGDELTHGD DPESKRRKMD ATIVDASPIG KPNREPRVVV  420
QTLSEVDILD DGYRWRKYGQ KVVKGNPNPS YYKCTNAGCP VRKHVERASH DPKAVITTYE  480
GKHNHDVPAG KTVNHDTSMP MVADVSNNIT TCMSAAFSGF RKNCDTMVIS QQYTQPEGSN  540
TVSLDLGVGI SRNHSNATTA PHRSSLREPI QSHQNQSISS ECSNVLIQGN PLSTLHGNLS  600
SCIIYGSREG KDEGFTFKTA PIDRSSDIHY ASTGNLVMGP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-35248489178Probable WRKY transcription factor 4
2lex_A3e-35248489178Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in starch synthesis (PubMed:12953112). Acts as a transcriptional activator in sugar signaling (PubMed:16167901). Interacts specifically with the SURE and W-box elements, but not with the SP8a element (PubMed:12953112). {ECO:0000269|PubMed:12953112, ECO:0000269|PubMed:16167901}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by sugar. {ECO:0000269|PubMed:12953112}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908582.10.0WRKY transcription factor SUSIBA2 isoform X2
SwissprotQ6VWJ60.0WRK46_HORVU; WRKY transcription factor SUSIBA2
TrEMBLA0A2H3YMB20.0A0A2H3YMB2_PHODC; WRKY transcription factor SUSIBA2-like isoform X1
STRINGXP_008800638.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.21e-123WRKY family protein