PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908610.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 226aa    MW: 24712.7 Da    PI: 10.2378
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908610.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF69.72.7e-221662147
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                    krie++  rqv fskRr+g++KKA ELS+LC+ae+ vi+fs+ gk +
  XP_010908610.1 16 KRIESEEARQVCFSKRRAGLFKKAIELSILCGAEIGVIVFSPAGKPF 62
                    79*****************************************9855 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.71E-29882IPR002100Transcription factor, MADS-box
PROSITE profilePS5006626.969868IPR002100Transcription factor, MADS-box
SMARTSM004323.6E-35867IPR002100Transcription factor, MADS-box
CDDcd002658.75E-40980No hitNo description
PRINTSPR004047.0E-211030IPR002100Transcription factor, MADS-box
PfamPF003191.1E-251764IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-213045IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-214566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVRRKPSMGR QKIEIKRIES EEARQVCFSK RRAGLFKKAI ELSILCGAEI GVIVFSPAGK  60
PFSFGHPSVD SIIDRFISGS PSPTTIPSAN PRMPAAREMM VVRELNRQYT DLAALLETER  120
RKKVVLEEAV RVMRAGKAVS WEANIEELGL GELEGLQKSF ERLRMDMAMR ADQLVIEAAH  180
AQSSSMAAAS SAAPPPSGVS LGFGRELEGS MALPPPTFFG HGRGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-17880173MEF2 CHIMERA
6byy_B1e-17880173MEF2 CHIMERA
6byy_C1e-17880173MEF2 CHIMERA
6byy_D1e-17880173MEF2 CHIMERA
6bz1_A1e-17880173MEF2 CHIMERA
6bz1_B1e-17880173MEF2 CHIMERA
6bz1_C1e-17880173MEF2 CHIMERA
6bz1_D1e-17880173MEF2 CHIMERA
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908610.11e-162agamous-like MADS-box protein AGL62
TrEMBLA0A2H3XTF61e-117A0A2H3XTF6_PHODC; agamous-like MADS-box protein AGL62
STRINGXP_008788342.11e-117(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.12e-34AGAMOUS-like 61