PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908697.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

BBR-BPC

Protein Properties

Length: 327aa MW: 36209.5 Da PI: 10.1291

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908697.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	366	6.9e-112	10	327	16	301
GAGA_bind 16 paaslkenlglqlmssiaerdakirernlalsekkaavaerdmaflqrdkalaernkalverdnkllalllvensla.....salpvgvqvlsgt 105 p++++k++++++lm+++aerd++i+ernla+sekkaa+aerdma lqrd+a+ ern+a++ rdn+++al+ ++++ + + +++g++ t XP_010908697.1 10 PQHQMKDHQTMKLMAIMAERDSAIHERNLAISEKKAALAERDMAILQRDAAIMERNNAIMGRDNAIAALQCARENGVngnggNGCSPGCT--TLT 102 5689****************************************************************99888774554444444444..445 PP GAGA_bind 106 ksidslqqlse..pqledsave.lreeeklealpieeaaeeakekkkkkkrqrakkpkekkakkkkkksekskkkvkkesader........... 186 k+ d+l +++ ql+d +++ r+++++ea pi++ ++++++++k+k+ ++++ ++ +kk k+++ksk++ + + ++ + XP_010908697.1 103 KHHDHLPHVHPspLQLSDAPYDhERQMHITEACPISSVVDSVSKRHKTKRMRKENGVQAMPTKKSSKSQKKSKRNGSDDLSK-Qvsiskfhgewk 196 55555555444779****99***********9999999998777777666666666666555555555544443.2468899* PP GAGA_bind 187 ................skaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgaf 265 k+++k +dl+ln+vs+Dest+PvPvCsCtG+ + CYkWGnGGWqS+CCttt+SvyPLPv++++r+aR++grKmS+gaf XP_010908697.1 197 gqgqvgsggdlnkvsmPKHQWKGQDLGLNQVSFDESTMPVPVCSCTGKFHPCYKWGNGGWQSSCCTTTLSVYPLPVMPNKRHARVGGRKMSGGAF 291 ***********99************************************************************************** PP GAGA_bind 266 kklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 klL++LaaeG+dls pvDLkdhWAkHGtn+++ti+ XP_010908697.1 292 IKLLSRLAAEGHDLSMPVDLKDHWAKHGTNRYITIK 327 *********************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	6.6E-129	1	327	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	2.9E-97	7	327	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 327 aa Download sequence Send to blast
MLLSAFWMMP QHQMKDHQTM KLMAIMAERD SAIHERNLAI SEKKAALAER DMAILQRDAA 60 IMERNNAIMG RDNAIAALQC ARENGVNGNG GNGCSPGCTT LTKHHDHLPH VHPSPLQLSD 120 APYDHERQMH ITEACPISSV VDSVSKRHKT KRMRKENGVQ AMPTKKSSKS QKKSKRNGSD 180 DLSKQVSISK FHGEWKGQGQ VGSGGDLNKV SMPKHQWKGQ DLGLNQVSFD ESTMPVPVCS 240 CTGKFHPCYK WGNGGWQSSC CTTTLSVYPL PVMPNKRHAR VGGRKMSGGA FIKLLSRLAA 300 EGHDLSMPVD LKDHWAKHGT NRYITIK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908697.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_010908698.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_029117627.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_029117628.1	0.0	barley B recombinant-like protein D isoform X1
Refseq	XP_029117629.1	0.0	barley B recombinant-like protein D isoform X1
Swissprot	Q5VSA8	1e-130	BBRD_ORYSJ; Barley B recombinant-like protein D
TrEMBL	A0A2H3ZHQ5	0.0	A0A2H3ZHQ5_PHODC; barley B recombinant-like protein D isoform X1
STRING	XP_008776328.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP6226	37	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42520.1	7e-98	basic pentacysteine 6

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]