PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908720.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 1056aa MW: 116545 Da PI: 6.7345

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908720.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	97.4	1.6e-30	74	166	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk....tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+YA+++GF++r+s ++s+r+g+it+r+fvC keg+r+ ++k+ + k rrtra++r+gCka+++vkk+++g+w v++le+ HnH+l+ XP_010908720.1 74 FYNSYARRLGFNTRISVFHRSRRDGSITSRQFVCAKEGFRTYRSKQdpcgEGKPRRTRAVSRVGCKAMIRVKKQENGRWIVSRLEKAHNHALM 166 *******************************************99999***************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.9E-28	74	166	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.1E-27	278	371	IPR018289	MULE transposase domain
PROSITE profile	PS50966	11.152	560	596	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.5E-11	566	595	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.5E-10	571	598	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1056 aa Download sequence Send to blast
MEGTISCGGE SMETEMGHRD SDGMDYGLEL VVERSSGEGK EMPASPVVMF QGGDAKIEPF 60 EGMEFATEED AWTFYNSYAR RLGFNTRISV FHRSRRDGSI TSRQFVCAKE GFRTYRSKQD 120 PCGEGKPRRT RAVSRVGCKA MIRVKKQENG RWIVSRLEKA HNHALMAPSR VHCLRSHRLL 180 SESGKRAAND FQRARAVQGS EMLAIKGESH QTKTCYGEMI PKTNVGRGTS GIVEYIKHMQ 240 AEDPGFFFTR QLDGDRSVGN VFWADARSRM AYKHFGDVIT FDTSYKMNQY QIPFATFTGV 300 NHHRQPVLFG CALIVDDSES SLTWLFEMLH SAMSGRHPTS IISEQDRVIQ AAVARAFPHT 360 QHRICKWHIW KESQDKLSHV FLAYPSFKEE FFKSINMTET IDEFESSWRS LVARFDLRDN 420 EWLQSVYGCR HQWVPVYLRN AFFGEMTSAQ QCESRSSFFE GYINAQTDAQ MFIQQYEKAL 480 DSWYEKEVKA DFDTIYSLPN LKTSSSSMEK QAAELYTRKI FKIFQEELIE TCRYTADKIT 540 KDGEMSIYNV RKNEEEHKAY IVEFSSSETT ATCSCQMFEY SGILCRHILT VFSELGVNML 600 PSHYILKRWT RNAKDEGIVG INQRVVKDEE KDDSQSNSQD CQQSLTWRYN SLCREAIKFA 660 EDGATSMAIY NVAIRALQEA AKKVTAAKKN VGKVGCQGAF PKRSTDKENG AAAPLVLVTT 720 DGQACRTLTN DHHLVHCMQG VNLPVSLTTQ RQLYPSTIPA AGLNENGSLM LTVPLVSVQK 780 GDPKVAGTAS QLPQVLNLVE VGHSYASPGG GSNTASSGSS MQLVAVPMAF CVPLVTNLTA 840 ASSAPSNSSS THCSDSTSPA LHQLQLAPHL VAAQQSHTGT PDGAPDSPET VEDPSRLRSA 900 ATNSIRAAAL AAGARIASPS DAASIIKAVQ SKNAIHIRAG ELSPSSLKPL GPKPLGRHAA 960 NVHFVPVDRS DTVNVVLLGE KQVQGGVGGA MTSCEAGNLR GQAVLHKEFK DEMATDGDSE 1020 DQTLEEGAME FTDSEDDKEF SDAEAGAGPG VSWAAG

Sequence ? help Back to Top

Protein Sequence Length: 1056 aa Download sequence Send to blast

MEGTISCGGE SMETEMGHRD SDGMDYGLEL VVERSSGEGK EMPASPVVMF QGGDAKIEPF  60
EGMEFATEED AWTFYNSYAR RLGFNTRISV FHRSRRDGSI TSRQFVCAKE GFRTYRSKQD  120
PCGEGKPRRT RAVSRVGCKA MIRVKKQENG RWIVSRLEKA HNHALMAPSR VHCLRSHRLL  180
SESGKRAAND FQRARAVQGS EMLAIKGESH QTKTCYGEMI PKTNVGRGTS GIVEYIKHMQ  240
AEDPGFFFTR QLDGDRSVGN VFWADARSRM AYKHFGDVIT FDTSYKMNQY QIPFATFTGV  300
NHHRQPVLFG CALIVDDSES SLTWLFEMLH SAMSGRHPTS IISEQDRVIQ AAVARAFPHT  360
QHRICKWHIW KESQDKLSHV FLAYPSFKEE FFKSINMTET IDEFESSWRS LVARFDLRDN  420
EWLQSVYGCR HQWVPVYLRN AFFGEMTSAQ QCESRSSFFE GYINAQTDAQ MFIQQYEKAL  480
DSWYEKEVKA DFDTIYSLPN LKTSSSSMEK QAAELYTRKI FKIFQEELIE TCRYTADKIT  540
KDGEMSIYNV RKNEEEHKAY IVEFSSSETT ATCSCQMFEY SGILCRHILT VFSELGVNML  600
PSHYILKRWT RNAKDEGIVG INQRVVKDEE KDDSQSNSQD CQQSLTWRYN SLCREAIKFA  660
EDGATSMAIY NVAIRALQEA AKKVTAAKKN VGKVGCQGAF PKRSTDKENG AAAPLVLVTT  720
DGQACRTLTN DHHLVHCMQG VNLPVSLTTQ RQLYPSTIPA AGLNENGSLM LTVPLVSVQK  780
GDPKVAGTAS QLPQVLNLVE VGHSYASPGG GSNTASSGSS MQLVAVPMAF CVPLVTNLTA  840
ASSAPSNSSS THCSDSTSPA LHQLQLAPHL VAAQQSHTGT PDGAPDSPET VEDPSRLRSA  900
ATNSIRAAAL AAGARIASPS DAASIIKAVQ SKNAIHIRAG ELSPSSLKPL GPKPLGRHAA  960
NVHFVPVDRS DTVNVVLLGE KQVQGGVGGA MTSCEAGNLR GQAVLHKEFK DEMATDGDSE  1020
DQTLEEGAME FTDSEDDKEF SDAEAGAGPG VSWAAG

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908720.1	0.0	protein FAR1-RELATED SEQUENCE 5
Refseq	XP_029117635.1	0.0	protein FAR1-RELATED SEQUENCE 5
Swissprot	Q9SZL8	0.0	FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5
TrEMBL	A0A3Q0HVA8	0.0	A0A3Q0HVA8_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X5
STRING	XP_008778264.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	0.0	FAR1-related sequence 5

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]