PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908741.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

C2H2

Protein Properties

Length: 323aa MW: 34743.6 Da PI: 4.4083

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908741.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.4	5.2e-05	297	319	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+k+F++ L+ H + H XP_010908741.1 297 RCKSCSKTFNSENALQAHTKAkH 319 7*****************99877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	10.99	296	323	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	298	319	IPR007087	Zinc finger, C2H2
Pfam	PF12171	7.8E-5	298	316	IPR022755	Zinc finger, double-stranded RNA binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 323 aa Download sequence Send to blast
MEFWGVEVKP GEIVKCDPGE DKYLHLSQAS LGEVKKDKGN ENVPIFVKFN DQKLVLGTLS 60 AEKCAQISYD LVFEKEFELS HSSKNVSVYF CGYKTVVADD DEADDFPDGD FDSDEDIQVA 120 QKVNGKTEVK DEQAKPSTGK VSVKADASAA KPKVKIEKAR KADKQNAVED DEDDGDDESE 180 EDEDESEEVS DDDDEDMAGA EDDSDDEDED ANSDEEDEAT PKKTESGKKR PAGSASKTPA 240 PEKKAKLVSP VGSQKTGGDG KKGGHAATPH PAKYAGRTPA GSDKSKQQTP KSAGSVRCKS 300 CSKTFNSENA LQAHTKAKHG AAK

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908741.1	0.0	histone deacetylase HDT2
TrEMBL	A0A2H3X6N8	1e-149	A0A2H3X6N8_PHODC; histone deacetylase HDT2-like
STRING	XP_008779118.1	1e-150	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2204	30	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44750.2	2e-30	histone deacetylase 3