PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908788.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

NAC

Protein Properties

Length: 454aa MW: 51463.5 Da PI: 5.2758

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908788.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	181.6	1.9e-56	6	133	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeelv +yLk+k++g+k+el e+i+evd+yk+ePwdLp k + +++ ewyfFs+rd+ky++g+r+nrat++gyWkatgkd++v XP_010908788.1 6 LPPGFRFHPTDEELVAYYLKRKINGRKIEL-EIIPEVDLYKCEPWDLPeKsFLPSKDLEWYFFSPRDRKYPNGSRTNRATQAGYWKATGKDRKVS 99 79**************************.99**********95334455777********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 s ++++vg+kktLv+y+grap+g++tdWvmheyrl XP_010908788.1 100 S-QRRAVGTKKTLVYYRGRAPHGSRTDWVMHEYRL 133 9.8999*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.09E-64	4	156	IPR003441	NAC domain
PROSITE profile	PS51005	61.709	6	156	IPR003441	NAC domain
Pfam	PF02365	7.6E-30	7	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 454 aa Download sequence Send to blast
MAPVTLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPEKSFLPSK 60 DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVSS QRRAVGTKKT LVYYRGRAPH 120 GSRTDWVMHE YRLDEKECET ASGLQDAYAL CRIFKKSAPG PKIIEHYGAP YEEHSEWMSN 180 DRSPTVDLSS DGRGEDLDSC AYPFPRGTCS SEMIHGASFN ASASIDSKWM QFLNEETFAS 240 SSSFYHLPSF SYVPSKVDVA SDCARLQHTL SLPPLETEDF PQLDLADSKI LHSGRLQGNI 300 NEVDILQEIL SVASASQQLI NNSGYPDIWA GSNYHLDEFS CLLDFEVDRK TEGMHFSPMD 360 GMGSSRSMTK SCEAEEPTKL IEICDLEEEF KNEKGAENLK GVKILNNELI EITMEGQRST 420 PVDSTPGHQV GETADAEDCR RSQSIHQFSR FKKH

Sequence ? help Back to Top

Protein Sequence Length: 454 aa Download sequence Send to blast

MAPVTLPPGF RFHPTDEELV AYYLKRKING RKIELEIIPE VDLYKCEPWD LPEKSFLPSK  60
DLEWYFFSPR DRKYPNGSRT NRATQAGYWK ATGKDRKVSS QRRAVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLDEKECET ASGLQDAYAL CRIFKKSAPG PKIIEHYGAP YEEHSEWMSN  180
DRSPTVDLSS DGRGEDLDSC AYPFPRGTCS SEMIHGASFN ASASIDSKWM QFLNEETFAS  240
SSSFYHLPSF SYVPSKVDVA SDCARLQHTL SLPPLETEDF PQLDLADSKI LHSGRLQGNI  300
NEVDILQEIL SVASASQQLI NNSGYPDIWA GSNYHLDEFS CLLDFEVDRK TEGMHFSPMD  360
GMGSSRSMTK SCEAEEPTKL IEICDLEEEF KNEKGAENLK GVKILNNELI EITMEGQRST  420
PVDSTPGHQV GETADAEDCR RSQSIHQFSR FKKH

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-57	1	162	12	171	NO APICAL MERISTEM PROTEIN
3swm_A	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_B	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_C	2e-57	1	162	15	174	NAC domain-containing protein 19
3swm_D	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_A	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_B	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_C	2e-57	1	162	15	174	NAC domain-containing protein 19
3swp_D	2e-57	1	162	15	174	NAC domain-containing protein 19
4dul_A	1e-57	1	162	12	171	NAC domain-containing protein 19
4dul_B	1e-57	1	162	12	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor directing sieve element enucleation and cytosol degradation. Not required for formation of lytic vacuoles. Regulates, with NAC086, the transcription of NEN1, NEN2, NEN3, NEN4, RTM1, RTM2, UBP16, PLDZETA, ABCB10 and At1g26450. {ECO:0000269\|PubMed:25081480}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00212	DAP	Transfer from AT1G65910	Download

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Regulated by the transcription factor APL (AC Q9SAK5). {ECO:0000269\|PubMed:25081480}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908787.1	0.0	NAC domain-containing protein 86 isoform X2
Swissprot	A4VCM0	1e-101	NAC45_ARATH; NAC domain-containing protein 45
TrEMBL	A0A2H3X4N5	0.0	A0A2H3X4N5_PHODC; NAC domain-containing protein 86-like
STRING	XP_008778272.1	0.0	(Phoenix dactylifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65910.1	1e-123	NAC domain containing protein 28

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]