PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908809.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 883aa    MW: 100719 Da    PI: 6.3377
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908809.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR153.67.2e-17122205190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY++YA +vGF v ++ks+ + + g + +  +vC+k gk + +        ++r++ +t+C+a++ vk++ dg  ++ + +leHnH+++
  XP_010908809.1 122 NFYKRYALHVGFGVAVKKSSFT-TYGLCRRLVLVCTKGGKGRANACY-----QSRPTAKTNCQAMIIVKLWGDGLLHLVEANLEHNHAVS 205
                     6****************99998.7888****************9999.....99*********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS0001808294IPR018247EF-Hand 1, calcium-binding site
PfamPF031015.1E-15122206IPR004330FAR1 DNA binding domain
PfamPF105512.8E-31308402IPR018289MULE transposase domain
PROSITE profilePS509669.73595631IPR007527Zinc finger, SWIM-type
PfamPF044341.3E-6595627IPR007527Zinc finger, SWIM-type
SMARTSM005751.8E-4606633IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 883 aa     Download sequence    Send to blast
MIHSKSFSQG NSNHSLMESR YNQEKEILLM NGDAYLDKNC NEDEVNDRTT TEEDETSQNL  60
LADSINQEPM DEGKTAVAPE NDDDDGGKMD KAELEEGHKV TGLDDRTPQL GMVFKSYEEV  120
VNFYKRYALH VGFGVAVKKS SFTTYGLCRR LVLVCTKGGK GRANACYQSR PTAKTNCQAM  180
IIVKLWGDGL LHLVEANLEH NHAVSPSTAR FLRCYKKMSS GMTKDLAVRA AGHEDLLFGD  240
KECVNSIEGG RLKLGEGDDE AILQFFARMQ TKNPNFFYLL DLDVEGHMRN VFWADSRSRA  300
AYQYFSDVVY FDTTCLKNKY DIPLALFVGV NHHGQLVLLG CGLVSDESTE NYLWLFKAWL  360
TCMRGCPPNA IIIDECRAIQ GAVADVFPEA CHRICLWHIM KNVQQNLSGF EEYKILKKEL  420
KKVVYDSLRV NEFEEGWRDL MKRYGLEGSE WLNILYENRQ LWAPVFLKNT FWAGMSIARH  480
KESITTFFEG CVYPGTSLKC FLSNYEMVLQ TKYEMEARAD LESFHEGRVF VTKLHMEEHL  540
SKIYTLNMFK KFQDELKAIV YCQVSLVKVD GPISTFEVKE CAFMEGGEKA QDRNYEVLYN  600
VDEFDIECIC GSFQFRGILC RHALSVLKLQ QVYEIPAQYI LQRWTKDLKQ LFALDRYSKD  660
VASNNRMERY DYLSMRCLQL VEVGMISEEK YHLALKLLRE VEKSLLDDNM CRDLQRRLLP  720
FETRSNASDE NHLASQLGIV EGNKIPNSLP AKRRGRPPKK RKEDSNTEMI SSPSNQKDSL  780
RASSDGGQSN VFQAASTASH LGSHIRTHGG VDLMEEVNPN DLSFGSHFGL QANHQHHLGN  840
QLQSANLLQG QFGQQTVGNS SGMQWIYQQM LQEDHAPFGR RTG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908809.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_010908823.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_019704280.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
RefseqXP_029118156.10.0protein FAR1-RELATED SEQUENCE 6 isoform X1
TrEMBLA0A2H3XSP20.0A0A2H3XSP2_PHODC; protein FAR1-RELATED SEQUENCE 6-like isoform X1
STRINGXP_008788240.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-134FAR1-related sequence 6