PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010908915.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Nin-like

Protein Properties

Length: 918aa MW: 101071 Da PI: 6.9795

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010908915.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	80.6	1.7e-25	570	619	2	51
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiks 51 ek+i+l++l++y+s ++kdAAk++gvc+T+LKriCR++GI RWP+Rk+++ XP_010908915.1 570 EKNINLSVLQQYYSETLKDAAKSIGVCQTTLKRICRRNGILRWPSRKLTK 619 79*********************************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55781	4.25E-5	216	294	IPR029016	GAF domain-like
Gene3D	G3DSA:3.30.450.40	2.3E-4	216	294	IPR029016	GAF domain-like
PROSITE profile	PS51519	16.051	554	640	IPR003035	RWP-RK domain
Pfam	PF02042	4.7E-22	572	619	IPR003035	RWP-RK domain
SuperFamily	SSF54277	4.91E-24	809	901	No hit	No description
PROSITE profile	PS51745	24.528	819	901	IPR000270	PB1 domain
SMART	SM00666	5.0E-24	819	901	IPR000270	PB1 domain
Pfam	PF00564	3.0E-19	820	900	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	1.2E-23	820	900	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 918 aa Download sequence Send to blast
MDGFSPFLEG SGSPMSVDLF SDSAQKAINT FTELCSPPIA DPVLSPFIYS VARLNPGSET 60 FLASPNSQAS CRDSVPRICD DSINSAGVDA CFRDDSAPQN SGLQPGFLLN SLQIDMPGRN 120 GLQFNVSDAE ERNTVVPKSM MGVSLAERLL KALSLFKESS GAGILAQAWM PMNQGDKYIL 180 STYEQPYLLD RILAGYREVS RSYTFSAKEA PGSITGLPGR VFVSGMPEWT SNIAYYHRQE 240 YLRVEYALDY EVRGLLAVPM FDLNERSCCG VLELVTVKEK SDFDSEMDSI FRALQAVNLR 300 SVKICARKQS LKMGQKSAFT EILDVLRAIC HAHMLPLALT WVPLSNKGCV DECTRDTAEA 360 NFISDRKIVL CIQESACYVN DQQMQGFLRA CSEHHLQNGQ GIAGKAIQST HPVFSSDIKS 420 YDVHQYPLAH HARKFGLHAA VAIRLRSTHT GNDNYILEFF LPINCKGSVE QQLLLNNMSI 480 TLQRICRSLR TVSDTEAIRT DVTNEGPGTR QTISVSAENS QHLHDDTECN LTKLPFEFQD 540 MEAGKQGDAH PSQMKSGSPR HPKKKRSTVE KNINLSVLQQ YYSETLKDAA KSIGVCQTTL 600 KRICRRNGIL RWPSRKLTKA SHSLSEIQNM LDSVPGVAGM LKYDNATGKL FTEVSSPEKQ 660 AATASEPLRP CLPVQFGGIL EEEACLVGRN KIGNSGQPQL HHHEANKASI PPFGMSDKCK 720 VTSGGGLSSL AKEKCCHDAS SKDGFGPESL KCSTRSKSSS SMAIVEEMHT QMDASEQIIE 780 QSHPSYSSMA DSSSGSASSC PTVKRSLKNN MSATDFGSAI RVKATYKEDT VRFRFSLSMG 840 FHQLIQVIEK RFKLCSGTFQ LKYMDDENEW VNLADESDLQ ECVEVLQSMQ SQSLRLLVRD 900 LPFATSSLAG GSSILMKP

Sequence ? help Back to Top

Protein Sequence Length: 918 aa Download sequence Send to blast

MDGFSPFLEG SGSPMSVDLF SDSAQKAINT FTELCSPPIA DPVLSPFIYS VARLNPGSET  60
FLASPNSQAS CRDSVPRICD DSINSAGVDA CFRDDSAPQN SGLQPGFLLN SLQIDMPGRN  120
GLQFNVSDAE ERNTVVPKSM MGVSLAERLL KALSLFKESS GAGILAQAWM PMNQGDKYIL  180
STYEQPYLLD RILAGYREVS RSYTFSAKEA PGSITGLPGR VFVSGMPEWT SNIAYYHRQE  240
YLRVEYALDY EVRGLLAVPM FDLNERSCCG VLELVTVKEK SDFDSEMDSI FRALQAVNLR  300
SVKICARKQS LKMGQKSAFT EILDVLRAIC HAHMLPLALT WVPLSNKGCV DECTRDTAEA  360
NFISDRKIVL CIQESACYVN DQQMQGFLRA CSEHHLQNGQ GIAGKAIQST HPVFSSDIKS  420
YDVHQYPLAH HARKFGLHAA VAIRLRSTHT GNDNYILEFF LPINCKGSVE QQLLLNNMSI  480
TLQRICRSLR TVSDTEAIRT DVTNEGPGTR QTISVSAENS QHLHDDTECN LTKLPFEFQD  540
MEAGKQGDAH PSQMKSGSPR HPKKKRSTVE KNINLSVLQQ YYSETLKDAA KSIGVCQTTL  600
KRICRRNGIL RWPSRKLTKA SHSLSEIQNM LDSVPGVAGM LKYDNATGKL FTEVSSPEKQ  660
AATASEPLRP CLPVQFGGIL EEEACLVGRN KIGNSGQPQL HHHEANKASI PPFGMSDKCK  720
VTSGGGLSSL AKEKCCHDAS SKDGFGPESL KCSTRSKSSS SMAIVEEMHT QMDASEQIIE  780
QSHPSYSSMA DSSSGSASSC PTVKRSLKNN MSATDFGSAI RVKATYKEDT VRFRFSLSMG  840
FHQLIQVIEK RFKLCSGTFQ LKYMDDENEW VNLADESDLQ ECVEVLQSMQ SQSLRLLVRD  900
LPFATSSLAG GSSILMKP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010908915.1	0.0	protein NLP2
Swissprot	Q0JC27	0.0	NLP2_ORYSJ; Protein NLP2
TrEMBL	A0A2H3XT01	0.0	A0A2H3XT01_PHODC; protein NLP2
STRING	XP_008788345.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3670	35	73

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]