PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908988.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family GATA
Protein Properties Length: 240aa    MW: 25732.2 Da    PI: 8.1438
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908988.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA50.13.7e-16153189135
            GATA   1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C+nCg ++  Tp +Rrgp+g++tLCnaCGl+++ kg+
  XP_010908988.1 153 CQNCGISEklTPAMRRGPSGPRTLCNACGLMWANKGT 189
                     **********************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5101713.00780122IPR010402CCT domain
PfamPF062032.7E-1580121IPR010402CCT domain
SMARTSM004016.7E-10147201IPR000679Zinc finger, GATA-type
PROSITE profilePS501149.803147204IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.57E-11152199No hitNo description
Gene3DG3DSA:3.30.50.101.4E-14152193IPR013088Zinc finger, NHR/GATA-type
PfamPF003201.1E-13153189IPR000679Zinc finger, GATA-type
CDDcd002029.25E-14153194No hitNo description
PROSITE patternPS003440153180IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
MDGQHGLPPS DPPACEKQEI PDGTAAAGGP LDQDEGIDAA VSLVQAVLLL LGGCEMPSGS  60
AGMALPCLQD DRYTTMPAKR IASLIRFREK RKERCFDKKI RYNVRKEVAL RMKRRKGQFA  120
GKTNPEDEAS ASSSCDPAQS SSHDDNPREM KNCQNCGISE KLTPAMRRGP SGPRTLCNAC  180
GLMWANKGTL RSVSTASKMG IQNPVNPNEL PGSVGSEMKS DNKAVLTSNN HDSGVTIAEM
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908988.11e-178GATA transcription factor 19 isoform X2
SwissprotB8AR303e-68GAT19_ORYSI; GATA transcription factor 19
TrEMBLA0A2H3WZ281e-125A0A2H3WZ28_PHODC; GATA transcription factor 19-like
STRINGXP_008775860.11e-125(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G51600.22e-46ZIM-LIKE 2