PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909045.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family NF-YA
Protein Properties Length: 330aa    MW: 35584.9 Da    PI: 9.2912
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909045.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA104.11.2e-32158214158
       CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                     +ep+YVNaKQy++Il+RRq+Rak+e ekk+ +k rkpylheSRh hA+rR+Rg+gGrF
  XP_010909045.1 158 EEPVYVNAKQYHGILRRRQSRAKAELEKKV-IKVRKPYLHESRHLHAMRRARGCGGRF 214
                     69****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.0E-37156217IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.666157217IPR001289Nuclear transcription factor Y subunit A
PfamPF020457.5E-28159214IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006165.6E-24160182IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860162182IPR018362CCAAT-binding factor, conserved site
PRINTSPR006165.6E-24191214IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0055046Biological Processmicrogametogenesis
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MESRAEGTNT VDANGQGALP STINAQPWWR GPGFGVISPS ILADSASKSA SVNLPVGGAR  60
NKGGQAQSHD RADGTDGSFG QEHHHLQPVS STMPPMMPEY LAPHTQLELG QSIACATYSY  120
SDPYLSRVMA PYGTQALVHP QLLGMPYTRM PLPLEMTEEP VYVNAKQYHG ILRRRQSRAK  180
AELEKKVIKV RKPYLHESRH LHAMRRARGC GGRFLNTKKA EANAAITNPE NGGNTGASIP  240
TQSASSSASP VLPSNCPGSN MNEIKRPVVQ DICEAQAYTN GNDGYKQQSG FQLSSFHSKS  300
GERVEEGDCS GQQRGGILVN RPPNRAVAIQ
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A2e-20157222166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909045.10.0nuclear transcription factor Y subunit A-7 isoform X2
RefseqXP_010909046.10.0nuclear transcription factor Y subunit A-7 isoform X2
TrEMBLA0A2H3XYY80.0A0A2H3XYY8_PHODC; nuclear transcription factor Y subunit A-1
STRINGXP_008790783.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G20910.15e-52nuclear factor Y, subunit A9