PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909111.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 234aa    MW: 25558.6 Da    PI: 10.7033
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909111.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF689.1e-221761145
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45
                    krie++  rqv fskRr g++KKA+ELS+LC+ae+ vi+fs+ g+
  XP_010909111.1 17 KRIESEEARQVCFSKRRVGLFKKANELSILCGAEIGVIVFSPAGQ 61
                    79****************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006626.618969IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.79E-28980IPR002100Transcription factor, MADS-box
SMARTSM004329.8E-35968IPR002100Transcription factor, MADS-box
CDDcd002655.08E-381078No hitNo description
PRINTSPR004043.2E-201131IPR002100Transcription factor, MADS-box
PfamPF003191.8E-251865IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-203146IPR002100Transcription factor, MADS-box
PRINTSPR004043.2E-204667IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009960Biological Processendosperm development
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MATRRKPSMG RQKIEIKRIE SEEARQVCFS KRRVGLFKKA NELSILCGAE IGVIVFSPAG  60
QPFSFGHPSV DSIIDRFLSG GPSPPTLASA DRRMPAAREM MVVRELNRQY TELAALLETE  120
RRRKVVLEEA VRVKRAGEAA LWGANVDELG LGELERLHKS LERLRRDVAR CADQLVIEAA  180
HARSSSIAAA SRSTAPPPPP GIHLGFGRGL EGSMALILPP PPTPTAFGYG RGLF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A5e-17977169MEF2 CHIMERA
6byy_B5e-17977169MEF2 CHIMERA
6byy_C5e-17977169MEF2 CHIMERA
6byy_D5e-17977169MEF2 CHIMERA
6bz1_A6e-17977169MEF2 CHIMERA
6bz1_B6e-17977169MEF2 CHIMERA
6bz1_C6e-17977169MEF2 CHIMERA
6bz1_D6e-17977169MEF2 CHIMERA
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909111.11e-167agamous-like MADS-box protein AGL62
TrEMBLA0A2H3XTF61e-131A0A2H3XTF6_PHODC; agamous-like MADS-box protein AGL62
STRINGXP_008788342.11e-132(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP122436128
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-41AGAMOUS-like 62