PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909118.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

Trihelix

Protein Properties

Length: 571aa MW: 63142.8 Da PI: 6.1197

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909118.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	68.9	9.9e-22	121	245	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk......................................lkkplWeevskkmrergferspkqCkekwenl 57 +Wt+++v++Li ++ +++++ + g +kk++W++vs++m+e+gf +sp+qC++k+++l XP_010909118.1 121 KWTDSMVRLLISVVYRVGDDGGGGGgpegepqqphaaasassvakgkkglgtsasatsasallQKKGKWKSVSRAMMEKGFYVSPQQCEDKFNDL 215 7*********999888888765445566777788888888888889999999999999999**************************** PP trihelix 58 nkrykkikegekkr.tsessstcpyfdqle 86 nkryk++++ +k+ +++++++ +++d ++ XP_010909118.1 216 NKRYKRVNDLLGKGtACRVVENQALLDTMD 245 **********559****9999997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.6E-16	183	270	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 571 aa Download sequence Send to blast
MEGGGGMPGG MLPSTMGSAG LLGLEMPLHP HQHPQQQQKQ FLHPQQQQHI FPFQPPQSGS 60 DIDHQMRHAT SSSYSPYSAR GKQQPTLSSE DEQQPGLGDE GDGARRVSSQ SPTPSPWQRM 120 KWTDSMVRLL ISVVYRVGDD GGGGGGPEGE PQQPHAAASA SSVAKGKKGL GTSASATSAS 180 ALLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDLLGKGT ACRVVENQAL 240 LDTMDLSPKA KEEARKLLNS KHLFFREMCA YHNATATANL ASAPPPQMQP PPPLHADHQQ 300 PCFHHPPTAV SVGKRGTTAV EEDGMATHEE DEDDDDDDVN TEEDDDDDDD DEQEDDDDET 360 DYHHKSKRRA HHGDGHHQHQ GKLEEAEDED NKGLVGDLGK AEGAKRARRM FLGGSPPLSL 420 SLSSPSSIST SMQQLKSELM GMAGGGEQQQ RQWLKRRVVE LEEQRVGYES RALQLERQRF 480 KWLRFSTNKE REMERMKLEN DRLRLENERM LLLLRQKEFE LLGGGGGGGA DNQLQQQQQQ 540 LMLQPATNAN HKRPTGDHHL NPSGDHISTA A

Sequence ? help Back to Top

Protein Sequence Length: 571 aa Download sequence Send to blast

MEGGGGMPGG MLPSTMGSAG LLGLEMPLHP HQHPQQQQKQ FLHPQQQQHI FPFQPPQSGS  60
DIDHQMRHAT SSSYSPYSAR GKQQPTLSSE DEQQPGLGDE GDGARRVSSQ SPTPSPWQRM  120
KWTDSMVRLL ISVVYRVGDD GGGGGGPEGE PQQPHAAASA SSVAKGKKGL GTSASATSAS  180
ALLQKKGKWK SVSRAMMEKG FYVSPQQCED KFNDLNKRYK RVNDLLGKGT ACRVVENQAL  240
LDTMDLSPKA KEEARKLLNS KHLFFREMCA YHNATATANL ASAPPPQMQP PPPLHADHQQ  300
PCFHHPPTAV SVGKRGTTAV EEDGMATHEE DEDDDDDDVN TEEDDDDDDD DEQEDDDDET  360
DYHHKSKRRA HHGDGHHQHQ GKLEEAEDED NKGLVGDLGK AEGAKRARRM FLGGSPPLSL  420
SLSSPSSIST SMQQLKSELM GMAGGGEQQQ RQWLKRRVVE LEEQRVGYES RALQLERQRF  480
KWLRFSTNKE REMERMKLEN DRLRLENERM LLLLRQKEFE LLGGGGGGGA DNQLQQQQQQ  540
LMLQPATNAN HKRPTGDHHL NPSGDHISTA A

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909118.1	0.0	chromatin-remodeling ATPase INO80
TrEMBL	A0A2H3X3T8	0.0	A0A2H3X3T8_PHODC; la-related protein CG11505-like
STRING	XP_008777881.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP11944	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10040.1	2e-51	sequence-specific DNA binding transcription factors