PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909133.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 808aa    MW: 92833.4 Da    PI: 8.804
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909133.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR174.42.4e-2390175190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                     +fY++Y++++GF v+k++s++   +g  +++tf+C k gk++ +  +   ++r++++ rt+Cka++++k ++ +++w+v++l leHnH+l 
  XP_010909133.1  90 QFYKAYGYRTGFGVTKRSSHNF--DGIRYRSTFTCCKGGKAKVKPGN---KSRRKPVVRTECKAMMVIKDQHfQNRWVVDDLILEHNHPLD 175
                     6****************99988..9999**************99988...89999**********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2090176IPR004330FAR1 DNA binding domain
PfamPF105513.9E-32296390IPR018289MULE transposase domain
PROSITE profilePS509669.606575611IPR007527Zinc finger, SWIM-type
PfamPF044342.3E-4583607IPR007527Zinc finger, SWIM-type
SMARTSM005750.0015586613IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MSGGPVSNSG VPEHPASSPS AAAPSSAGQT LRPRQPTSMA EEEPPLDPHS SPNPATTPQS  60
TTHKDAPGST EDGLVPKIGM IFESVDDAFQ FYKAYGYRTG FGVTKRSSHN FDGIRYRSTF  120
TCCKGGKAKV KPGNKSRRKP VVRTECKAMM VIKDQHFQNR WVVDDLILEH NHPLDPDMVR  180
FMKCFREFPS SVKRKLQIND DSGMPLDNST TAVSSQGFRN ENGSFTKRFC RNHLDKTKKL  240
KLGEGDAQAL MEFFENLQAQ NSNFFHSWDW NDEGCLRNVF WADIRSRAAY QYFSDVITFD  300
TMYLTDEYEI PFASFVGVNH HGQSVLLGCG LLADETMETY IWLFTKWLTC MNDKPPNAII  360
TDHCKAIAGA VAEVFPHARH RFCHWHIMKK LPEKLGRMKE AISSKMSKAV YDSLTVNDFE  420
GEWKEMIEQY HLQDNEWLSS LYEDRKKWVP AYIKDTFWAD MSTSQRGKSM KSFFDGHVTS  480
KTSLKMFLKQ YDNALKGKFE KEAQEDFRSF HTSPQLLSGL EFEKQIAKVY TMNIFLKFQD  540
EVKQLMQCNT NLVDRNGPIA TYLVTELAAG RKVDYKVVYN TDEQDVWCIC RSFQFRGILC  600
RHALCVLRQE LVMVLPSKYV LARWRKDFKR LHISASSPHI ASMREMRIYD DLYMRAHQYF  660
VDIVEIGATD HDLKEFALTV LKESRDKVIK YAESRGDRRI DDNTPTERPA SRKEKVVHHS  720
KKKKNKGPNK EKNTNLGQIQ NTRNSIDTST SVHVQANHPN EAWPMTPIGG PESFGHRVES  780
IPMDWLLHNP APYTQWRGNC SFYPSRRM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909133.10.0protein FAR1-RELATED SEQUENCE 6
TrEMBLA0A2H3WX550.0A0A2H3WX55_PHODC; protein FAR1-RELATED SEQUENCE 6-like
STRINGXP_008775026.10.0(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G52520.11e-142FAR1-related sequence 6