PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909238.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family WOX
Protein Properties Length: 244aa    MW: 26681.9 Da    PI: 10.2242
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909238.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.43.4e-2095154357
                     --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                     +R+++ +eq+++Le+l++   r+p+a+++e+++++l    +++ ++V++WFqN++a+e++
  XP_010909238.1  95 TRWNPAPEQIRALEALYRGgMRTPNAQQIEHITAELgkygRIEGKNVFYWFQNHKARERQ 154
                     7*****************99**************************************97 PP
2Wus_type_Homeobox114.55.1e-3795156465
  Wus_type_Homeobox   4 tRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        tRW+P peQi+ Le+ly+ G+rtPn+++i++itaeL +yG+ie+kNVfyWFQN+kaRerqkq
     XP_010909238.1  95 TRWNPAPEQIRALEALYRGGMRTPNAQQIEHITAELGKYGRIEGKNVFYWFQNHKARERQKQ 156
                        8***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.55E-1390160IPR009057Homeodomain-like
PROSITE profilePS5007110.25290155IPR001356Homeobox domain
SMARTSM003891.5E-792159IPR001356Homeobox domain
CDDcd000864.59E-595156No hitNo description
PfamPF000467.1E-1895154IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-796154IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001944Biological Processvasculature development
GO:0007165Biological Processsignal transduction
GO:0010067Biological Processprocambium histogenesis
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MKVQQLAMGG FWEHQLQEPS SPSSSSSSST TSSLTIHFKR LRPLAPKLTA TVTATTVAAS  60
QTIASLDVKG FNFPKAKCTA RNPDSSQVET QSGGTRWNPA PEQIRALEAL YRGGMRTPNA  120
QQIEHITAEL GKYGRIEGKN VFYWFQNHKA RERQKQKRSA LLALSSSNND SSSNSSTCPP  180
IMALKSTGSR GGRVGGGEVE EYYDGSCKRK CRSWGGVGRD IMEEGGGDRT LELFPLHPEG  240
KQMR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1190196GGRVGGG
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor which may be involved in developmental processes. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909238.10.0WUSCHEL-related homeobox 4 isoform X2
SwissprotQ6X7J97e-56WOX4_ARATH; WUSCHEL-related homeobox 4
TrEMBLA0A2H3X5K91e-74A0A2H3X5K9_PHODC; WUSCHEL-related homeobox 4
TrEMBLM0TQR56e-74M0TQR5_MUSAM; Uncharacterized protein
STRINGGSMUA_Achr8P15620_0011e-74(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP126923035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46480.18e-49WUSCHEL related homeobox 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Dolzblasz A, et al.
    Stem Cell Regulation by Arabidopsis WOX Genes.
    Mol Plant, 2016. 9(7): p. 1028-39
    [PMID:27109605]
  3. Guo X, et al.
    Identification of cyst nematode B-type CLE peptides and modulation of the vascular stem cell pathway for feeding cell formation.
    PLoS Pathog., 2017. 13(2): p. e1006142
    [PMID:28158306]
  4. Denis E, et al.
    WOX14 promotes bioactive gibberellin synthesis and vascular cell differentiation in Arabidopsis.
    Plant J., 2017. 90(3): p. 560-572
    [PMID:28218997]
  5. Kucukoglu M,Nilsson J,Zheng B,Chaabouni S,Nilsson O
    WUSCHEL-RELATED HOMEOBOX4 (WOX4)-like genes regulate cambial cell division activity and secondary growth in Populus trees.
    New Phytol., 2017. 215(2): p. 642-657
    [PMID:28609015]
  6. Yamaguchi YL, et al.
    Root-Knot and Cyst Nematodes Activate Procambium-Associated Genes in Arabidopsis Roots.
    Front Plant Sci, 2017. 8: p. 1195
    [PMID:28747918]