PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909259.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family bHLH
Protein Properties Length: 205aa    MW: 22761.8 Da    PI: 8.2409
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909259.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.82.6e-1071112854
                     HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     + r+RR+ri ++f  L++l+P        K++ +++Le+A++Y+k L
  XP_010909259.1  71 AARQRRHRISDRFRILKSLVPGG-----SKMDTVSMLEEAIHYVKFL 112
                     569******************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.64363112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-1468123IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.4E-1369118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.8E-1269118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.21E-1469116No hitNo description
PfamPF000101.1E-772112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 205 aa     Download sequence    Send to blast
MDTYGDQQME LMEAYHCKPT IPSPPPLPPL PPSSWGKEGE SSYILQHPRD RRRGGRRGSG  60
VKLSTDPQSV AARQRRHRIS DRFRILKSLV PGGSKMDTVS MLEEAIHYVK FLKAQIGLHQ  120
AALMLHPDDT PISFPSTICA TPTVGASGSD LTPRAFSSSS SYSHELPPQQ ILSYSLTPPT  180
PSLPPFPFSY FQGEEEILHQ VSFNY
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909259.11e-149transcription factor bHLH140-like
TrEMBLA0A2H3ZCC61e-80A0A2H3ZCC6_PHODC; transcription factor LAX PANICLE 1
STRINGXP_008811690.12e-81(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85533243
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.15e-28APRATAXIN-like