PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909342.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family C2H2
Protein Properties Length: 321aa    MW: 34808.9 Da    PI: 4.304
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909342.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2140.00015295317223
                     EETTTTEEESSHHHHHHHHHH.T CS
         zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                     +C+ C+k+F++   L+ H +  H
  XP_010909342.1 295 SCKSCNKMFNSENALQAHSKAkH 317
                     6*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.429294321IPR007087Zinc finger, C2H2
PfamPF128748.9E-5295312No hitNo description
PROSITE patternPS000280296317IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MEFWGVEVKP GETVECDPGQ DKYLHLSQAS LGGELKKDKG NENVPIFVKF NDKKLVLGTL  60
SAEKCAQISY DLVFEKEFEL SHSSKNASVF FCGYKTIVAD DDEIVDFQDS DFDSEEDVPL  120
GQKVNGKTEV KDEQVKPTTG KAGIAKADAS AAKPKVRIEE PNKADKQKVQ KADEDDEDDE  180
EDESEEDDNE SEEGSDDDED IAEADDDSDD EDDDESSDEE DAATPQKPES GKKRLVVSAS  240
KTPVPGKKAK LVSPVGMQET GGHTATPHPA KHAGKTPANS DKPKQQSPKS AGLVSCKSCN  300
KMFNSENALQ AHSKAKHGTA K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909342.10.0histone deacetylase HDT2 isoform X2
TrEMBLA0A2H3YTW01e-145A0A2H3YTW0_PHODC; histone deacetylase HDT2-like isoform X1
STRINGXP_008803802.11e-146(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-27histone deacetylase 3