PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909405.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family M-type_MADS
Protein Properties Length: 239aa    MW: 27544.2 Da    PI: 9.1994
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909405.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73e-181151343
                    --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
          SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                    i n+s r  tf kRr+g++KK +EL +LCd++++vi+++++
  XP_010909405.1 11 IANDSTRRATFKKRRKGLMKKVSELATLCDVKACVIVYGPQ 51
                    89*************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.9E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006617.689149IPR002100Transcription factor, MADS-box
CDDcd002661.86E-34285No hitNo description
PRINTSPR004042.2E-10323IPR002100Transcription factor, MADS-box
SuperFamilySSF554553.01E-25394IPR002100Transcription factor, MADS-box
PfamPF003194.3E-181151IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-102338IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-103859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MARKKVNLAW IANDSTRRAT FKKRRKGLMK KVSELATLCD VKACVIVYGP QEPQPEVWPS  60
VPEVTRVLAR FKSMPEMEQC KKMMNQEGFL RQRVAKQQEQ LRKQERENRE LETMLLMYQG  120
LAGRSLHSLR IEDATSLAWM VEMKVKAVQE RMGLVRAQMA SSSQQVVLEA PIEAPAPMAV  180
MKEKTPLEAA MEALQRQNWL MEVMNPNDNL MFGGGEEMVQ PYMDHTNNPW LDPCYFPLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLAWIANDSTRRATFKKRR
22125KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909405.11e-177agamous-like MADS-box protein AGL80
TrEMBLA0A2H3YKW11e-143A0A2H3YKW1_PHODC; agamous-like MADS-box protein AGL80
STRINGXP_008800341.11e-144(Phoenix dactylifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.12e-39AGAMOUS-like 80