PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909448.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

LBD

Protein Properties

Length: 207aa MW: 22864.1 Da PI: 4.7723

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909448.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	134.5	4.2e-42	42	141	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+C ++C lapyfp ++p kf +h++FGasn++kll++lpe++r da+ss+vyeA+ar+rdPvyG++g i +lq+q+++l+aela XP_010909448.1 42 PCAACKILRRRCIDKCLLAPYFPPNEPLKFSTAHRVFGASNIIKLLQELPESQRADAVSSMVYEANARMRDPVYGCAGAICQLQKQVSELQAELA 136 7********************************************************************************************** PP DUF260 96 llkee 100 ++++e XP_010909448.1 137 RAQAE 141 *9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.323	41	142	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.1E-42	42	139	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 207 aa Download sequence Send to blast
MEASVHATTT TFHYPSSSSP SSSTTSSPPP PRPSPPPVVL SPCAACKILR RRCIDKCLLA 60 PYFPPNEPLK FSTAHRVFGA SNIIKLLQEL PESQRADAVS SMVYEANARM RDPVYGCAGA 120 ICQLQKQVSE LQAELARAQA ELVTMQTQYA SLVATICMEM PQSQQFMLQS LDNFLDTNNL 180 NLLQSDGSMQ LDDYCQDSIW EAELLWT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	4e-44	37	143	6	112	LOB family transfactor Ramosa2.1
5ly0_B	4e-44	37	143	6	112	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909448.1	1e-152	LOB domain-containing protein 1
Swissprot	Q9SK08	7e-65	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A2H3YXP4	1e-103	A0A2H3YXP4_PHODC; LOB domain-containing protein 11-like
STRING	XP_008805041.1	1e-104	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP2645	37	90

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	4e-54	LOB domain-containing protein 11