PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909458.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

MYB_related

Protein Properties

Length: 156aa MW: 18161.4 Da PI: 5.0246

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909458.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	26.6	1.4e-08	14	48	1	35
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgR 35 +g+W++eEd +l++ ++++G+g +W + +++ g +R XP_010909458.1 14 KGPWSPEEDSKLKEFIEKYGTGgNWIALPHKAG-KR 48 79***********************99999998.55 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.14E-6	4	48	IPR009057	Homeodomain-like
Gene3D	G3DSA:1.10.10.60	2.0E-10	5	44	IPR009057	Homeodomain-like
PROSITE profile	PS50090	7.399	9	48	IPR017877	Myb-like domain
Pfam	PF00249	2.3E-7	14	48	IPR001005	SANT/Myb domain
CDD	cd00167	2.26E-4	16	48	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 156 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDSKLKEFIE KYGTGGNWIA LPHKAGKRVI EVDHLYFLAA 60 PSVAQVQLGL LAQMHWLLER HRQFEKHNQH SKRCHQLEKH WLPERYHELG RALHLGETEE 120 EEPECVEIEE GEEVYEADPK LAEELEEDED VLGYIR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP135	38	412

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G36890.1	2e-26	MYB family protein