PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010909461.1

Organism

Elaeis guineensis

Taxonomic ID

51953

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis

Family

FAR1

Protein Properties

Length: 898aa MW: 102145 Da PI: 8.0875

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010909461.1	genome	OG	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	88.1	1.2e-27	96	183	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YA++vGF vr+s+ ++++n it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +g+++vt+++ +HnH+la XP_010909461.1 96 EFYNTYAENVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPACMTIRLTPNGRYRVTEFVPNHNHQLA 183 6******************97766.************9999.999***********************************96 PP
2	FAR1	85.8	6.4e-27	225	312	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY+ YA ++GFs+r+++++ s ++ it+r fvCs+eg+re++k + ++ +++r+etrtgC a++ ++++ +gk++vt++++ HnH+l+ XP_010909461.1 225 EFYSMYAGRIGFSIRRASMTMSA-ENVITRRMFVCSREGFREKKKGA-KRVKKPRPETRTGCPACMIIRLTPSGKYHVTEFVTYHNHPLS 312 6****************9995.555************9999.99************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.6E-24	96	183	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.0E-23	225	312	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.6E-31	427	521	IPR018289	MULE transposase domain
Pfam	PF04434	1.5E-7	695	741	IPR007527	Zinc finger, SWIM-type
PROSITE profile	PS50966	10.794	695	742	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.3E-7	717	744	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 898 aa Download sequence Send to blast
MGGLYTEGVP VSFKIPSGTN PNFPSLSLAI ASTPSSPNPS KTLLLLLCSH IDRHGVLGKK 60 MTDAPRPNST TMEDANNARW LPRIDMLFES ENEAYEFYNT YAENVGFFVR RSTLWTTSKN 120 IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPACMT IRLTPNGRYR VTEFVPNHNH 180 QLAAASTIHM LRAKKMRRKA RAVRADLVDD TVRTPEFETE DEAYEFYSMY AGRIGFSIRR 240 ASMTMSAENV ITRRMFVCSR EGFREKKKGA KRVKKPRPET RTGCPACMII RLTPSGKYHV 300 TEFVTYHNHP LSVPSSTDLV MSHSVENGQD DESDMADGSA DDTVHKQARS HQSISLLSLD 360 SKNYLRSKRV KSIQVGDAGA TLEYLQKMQD NNPSFFYAVQ VDEDDNMTNF FWADAKSMMD 420 YNYFGDVVCF DTTYKIYGYG RPFALFIGVN HHKQIVIFGA ALLYDEGTES FKWLFETFKS 480 VMSGSQPKTV LTDRDAAMSE AIAAVWPGTS HRFCVWHIYQ NAVEQLSQAF HGSRTLGYDF 540 GRCLFDFEDE EEFLSAWKTM LQKYDLQDNQ WLAKLFDERE KWALVYGRET FYADIKSVQQ 600 KENLSTELKK YLSPERELLS FFEHYERILD ERRCAELQAD ANANLSTKKP PSIRMLRQAA 660 NAYTPAAFKM FEREFELYMD CMLYGCGETG TISNYRVTVE EKAKDHFVKF DSLDGTVTCS 720 CKKFEFIGIQ CRHVLKVLDT RNIKELPPQY IVKRWRKDAK AGVLSDNCPF SFDSDPQSSL 780 SKRYNYLCRI FSIAAARAAK SVESYAFIES QSDMLMDQVD QVLQARPSEM PALITTSCDR 840 SQNPVESAVA GTLRYDKANQ ASFIGGTANG LLVSQHSHPT MCWGQFPAGP PEQGGRPL

Sequence ? help Back to Top

Protein Sequence Length: 898 aa Download sequence Send to blast

MGGLYTEGVP VSFKIPSGTN PNFPSLSLAI ASTPSSPNPS KTLLLLLCSH IDRHGVLGKK  60
MTDAPRPNST TMEDANNARW LPRIDMLFES ENEAYEFYNT YAENVGFFVR RSTLWTTSKN  120
IITRRTFVCS REGFREKKKG AKEAKCPRPE TRIGCPACMT IRLTPNGRYR VTEFVPNHNH  180
QLAAASTIHM LRAKKMRRKA RAVRADLVDD TVRTPEFETE DEAYEFYSMY AGRIGFSIRR  240
ASMTMSAENV ITRRMFVCSR EGFREKKKGA KRVKKPRPET RTGCPACMII RLTPSGKYHV  300
TEFVTYHNHP LSVPSSTDLV MSHSVENGQD DESDMADGSA DDTVHKQARS HQSISLLSLD  360
SKNYLRSKRV KSIQVGDAGA TLEYLQKMQD NNPSFFYAVQ VDEDDNMTNF FWADAKSMMD  420
YNYFGDVVCF DTTYKIYGYG RPFALFIGVN HHKQIVIFGA ALLYDEGTES FKWLFETFKS  480
VMSGSQPKTV LTDRDAAMSE AIAAVWPGTS HRFCVWHIYQ NAVEQLSQAF HGSRTLGYDF  540
GRCLFDFEDE EEFLSAWKTM LQKYDLQDNQ WLAKLFDERE KWALVYGRET FYADIKSVQQ  600
KENLSTELKK YLSPERELLS FFEHYERILD ERRCAELQAD ANANLSTKKP PSIRMLRQAA  660
NAYTPAAFKM FEREFELYMD CMLYGCGETG TISNYRVTVE EKAKDHFVKF DSLDGTVTCS  720
CKKFEFIGIQ CRHVLKVLDT RNIKELPPQY IVKRWRKDAK AGVLSDNCPF SFDSDPQSSL  780
SKRYNYLCRI FSIAAARAAK SVESYAFIES QSDMLMDQVD QVLQARPSEM PALITTSCDR  840
SQNPVESAVA GTLRYDKANQ ASFIGGTANG LLVSQHSHPT MCWGQFPAGP PEQGGRPL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010909461.1	0.0	protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBL	A0A2H3X0R2	0.0	A0A2H3X0R2_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRING	XP_008776587.1	0.0	(Phoenix dactylifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-125	FAR1-related sequence 5