PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010909464.1
Organism
Elaeis guineensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family FAR1
Protein Properties Length: 857aa    MW: 98159.3 Da    PI: 7.9268
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010909464.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR188.21.2e-2755142190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fYn+YA++vGF vr+s+  ++++n  it+rtfvCs+eg+re++k + ++++ +r+etr+gC a+++++++ +g+++vt+++ +HnH+la
  XP_010909464.1  55 EFYNTYAENVGFFVRRSTLWTTSKNI-ITRRTFVCSREGFREKKKGA-KEAKCPRPETRIGCPACMTIRLTPNGRYRVTEFVPNHNHQLA 142
                     6********************97766.****************9999.999*************************************96 PP
2FAR185.96e-27184271190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+ YA ++GFs+r+++++ s  ++ it+r fvCs+eg+re++k + ++ +++r+etrtgC a++ ++++ +gk++vt++++ HnH+l+
  XP_010909464.1 184 EFYSMYAGRIGFSIRRASMTMSA-ENVITRRMFVCSREGFREKKKGA-KRVKKPRPETRTGCPACMIIRLTPSGKYHVTEFVTYHNHPLS 271
                     6******************9995.555****************9999.99**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.5E-2455142IPR004330FAR1 DNA binding domain
PfamPF031019.7E-24184271IPR004330FAR1 DNA binding domain
PfamPF105512.5E-31386480IPR018289MULE transposase domain
PfamPF044341.5E-7654700IPR007527Zinc finger, SWIM-type
PROSITE profilePS5096610.794654701IPR007527Zinc finger, SWIM-type
SMARTSM005752.3E-7676703IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 857 aa     Download sequence    Send to blast
MEEILTILSQ ASYKTFMKKM TDAPRPNSTT MEDANNARWL PRIDMLFESE NEAYEFYNTY  60
AENVGFFVRR STLWTTSKNI ITRRTFVCSR EGFREKKKGA KEAKCPRPET RIGCPACMTI  120
RLTPNGRYRV TEFVPNHNHQ LAAASTIHML RAKKMRRKAR AVRADLVDDT VRTPEFETED  180
EAYEFYSMYA GRIGFSIRRA SMTMSAENVI TRRMFVCSRE GFREKKKGAK RVKKPRPETR  240
TGCPACMIIR LTPSGKYHVT EFVTYHNHPL SVPSSTDLVM SHSVENGQDD ESDMADGSAD  300
DTVHKQARSH QSISLLSLDS KNYLRSKRVK SIQVGDAGAT LEYLQKMQDN NPSFFYAVQV  360
DEDDNMTNFF WADAKSMMDY NYFGDVVCFD TTYKIYGYGR PFALFIGVNH HKQIVIFGAA  420
LLYDEGTESF KWLFETFKSV MSGSQPKTVL TDRDAAMSEA IAAVWPGTSH RFCVWHIYQN  480
AVEQLSQAFH GSRTLGYDFG RCLFDFEDEE EFLSAWKTML QKYDLQDNQW LAKLFDEREK  540
WALVYGRETF YADIKSVQQK ENLSTELKKY LSPERELLSF FEHYERILDE RRCAELQADA  600
NANLSTKKPP SIRMLRQAAN AYTPAAFKMF EREFELYMDC MLYGCGETGT ISNYRVTVEE  660
KAKDHFVKFD SLDGTVTCSC KKFEFIGIQC RHVLKVLDTR NIKELPPQYI VKRWRKDAKA  720
GVLSDNCPFS FDSDPQSSLS KRYNYLCRIF SIAAARAAKS VESYAFIESQ SDMLMDQVDQ  780
VLQARPSEMP ALITTSCDRS QNPVESAVAG TLRYDKANQA SFIGGTANGL LVSQHSHPTM  840
CWGQFPAGPP EQGGRPL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010909461.10.0protein FAR1-RELATED SEQUENCE 5 isoform X1
TrEMBLA0A2H3X0R20.0A0A2H3X0R2_PHODC; protein FAR1-RELATED SEQUENCE 5-like isoform X1
STRINGXP_008776587.10.0(Phoenix dactylifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-126FAR1-related sequence 5